View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1907_low_34 (Length: 241)
Name: NF1907_low_34
Description: NF1907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1907_low_34 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 38835323 - 38835070
Alignment:
| Q |
1 |
attcagcaactcatcgctcactatgggaaaacacacccaaatagggacgaatcctaagaggcaca-cataaaaaaccataacaatcaaaacatataa--t |
97 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | | || | |
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| T |
38835323 |
attcagcaactcatcgctcactatgggaaaacacacccaaatagggacgaatcctaagaggcacaacataaaaaaccataacaatcaaaaaaaaaaaaat |
38835224 |
T |
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| Q |
98 |
tgttctcaaaactctatacctaatgtaatata----------atatatcttctacccaaatttagactaataatacatcattaactaatcactacattga |
187 |
Q |
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|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
38835223 |
tgttctcacaactctatacctaatgtaatatactataatataatatatcttctacccaaatttagactaataatacatcattaactaattactacattga |
38835124 |
T |
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| Q |
188 |
tatgtagaaagatcacccacagtctcagggtcaccttcccttaaacaattaatt |
241 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
38835123 |
tatgtagaaagatcaccaacagtctcagggtcaccttcccttaaacaattaatt |
38835070 |
T |
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