View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1907_low_40 (Length: 224)
Name: NF1907_low_40
Description: NF1907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1907_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 205
Target Start/End: Complemental strand, 34646615 - 34646422
Alignment:
| Q |
12 |
tagcataggctgaattgttgattaggatcatcaacacgatctagtttcaccaaatccaccacagctgattccaagttagtatagacgtcggatggtataa |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34646615 |
tagcataggctgaattgttgattaggatcatcaacacgatctagtttcaccaaatccaccacagctgattccaagttagtatagacgtcggaaggtataa |
34646516 |
T |
|
| Q |
112 |
gtgtcaatgttgtacctgaatcaattatgatgttaccttcatcatcaccaccttccgaagagcctccaaattctactcttttgtttccaacact |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34646515 |
gtgtcaatgttgtacctgaatcaattatgatgttaccttcatcatcaccaccttccgaagagcctccaaattctactcttttgtttccaacact |
34646422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 205
Target Start/End: Complemental strand, 34666309 - 34666116
Alignment:
| Q |
12 |
tagcataggctgaattgttgattaggatcatcaacacgatctagtttcaccaaatccaccacagctgattccaagttagtatagacgtcggatggtataa |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34666309 |
tagcataggctgaattgttgattaggatcatcaacacgatctagtttcaccaaatccaccacagctgattccaagttagtatagacgtcggaaggtataa |
34666210 |
T |
|
| Q |
112 |
gtgtcaatgttgtacctgaatcaattatgatgttaccttcatcatcaccaccttccgaagagcctccaaattctactcttttgtttccaacact |
205 |
Q |
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| T |
34666209 |
gtgtcaatgttgtacctgaatcaattatgatgttaccttcatcatcaccaccttccgaagagcctccaaattctactcttttgtttccaacact |
34666116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 28 - 148
Target Start/End: Original strand, 19648952 - 19649072
Alignment:
| Q |
28 |
gttgattaggatcatcaacacgatctagtttcaccaaatccaccacagctgattccaagttagtatagacgtcggatggtataagtgtcaatgttgtacc |
127 |
Q |
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|||||||||||||||||||||||||||||||||||| | | || || |||||||| |||||||| || | || |||| ||| |||||||||||||| |
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| T |
19648952 |
gttgattaggatcatcaacacgatctagtttcaccagttgtgctaccgccgattccaaattagtataaacatgagacggtaaaagagtcaatgttgtacc |
19649051 |
T |
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| Q |
128 |
tgaatcaattatgatgttacc |
148 |
Q |
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||||||| |||||||||||| |
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| T |
19649052 |
agaatcaagtatgatgttacc |
19649072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 12 - 205
Target Start/End: Complemental strand, 45645811 - 45645621
Alignment:
| Q |
12 |
tagcataggctgaattgttgattaggatcatcaacacgatctagtttcaccaaatccaccacagctgattccaagttagtatagacgtcggatggtataa |
111 |
Q |
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|||||||||| |||| ||| || ||||||||| ||||| | ||||||||||||||| ||||||||||||||||| || |||| ||||| | ||||| || |
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| T |
45645811 |
tagcataggccgaatagtttataaggatcatccacacgttttagtttcaccaaatcaaccacagctgattccaaatttttataaacgtcagctggtaaaa |
45645712 |
T |
|
| Q |
112 |
gtgtcaatgttgtacctgaatcaattatgatgttaccttcatcatcaccaccttccgaagagcctccaaattctactcttttgtttccaacact |
205 |
Q |
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||||||||||||||||||||||||| ||||||||||| ||||||| | || ||||| |||||||||||||||||||||||||||||||| |
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| T |
45645711 |
ccatcaatgttgtacctgaatcaattataatgttaccttc---atcaccatcctctgaagaccctccaaattctactcttttgtttccaacact |
45645621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 15 - 202
Target Start/End: Complemental strand, 34303279 - 34303095
Alignment:
| Q |
15 |
cataggctgaattgttgattaggatcatcaacacgatctagtttcaccaaatccaccacagctgattccaagttagtatagacgtcggatggtataagtg |
114 |
Q |
| |
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||||| || ||||||||||||||||||||||| || |||||| |||||||||| || | ||||| | ||| |||||||| || || ||||||| || || |
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| T |
34303279 |
catagactaaattgttgattaggatcatcaactcgttctagtgtcaccaaatctacgattgctgaattcaatttagtataaacatcagatggtacaaatg |
34303180 |
T |
|
| Q |
115 |
tcaatgttgtacctgaatcaattatgatgttaccttcatcatcaccaccttccgaagagcctccaaattctactcttttgtttccaac |
202 |
Q |
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||| |||||| |||||||||||||||||||||||| ||| |||| || || || ||| |||||||||||||||||| |||||| |
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| T |
34303179 |
tcacaattgtacttgaatcaattatgatgttaccttcttcaacacc---ttttgaggaccctgcaaattctactcttttgtctccaac |
34303095 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 36 - 205
Target Start/End: Complemental strand, 14183535 - 14183369
Alignment:
| Q |
36 |
ggatcatcaacacgatctagtttcaccaaatccaccacagctgattccaagttagtatagacgtcggatggtataagtgtcaatgttgtacctgaatcaa |
135 |
Q |
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||||||| |||||| | ||||||||||| |||| ||| ||||||||||| ||| |||| || || | ||| |||| ||||| |||||||||||||||| |
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| T |
14183535 |
ggatcattaacacgcttcagtttcaccaattccaacaccgctgattccaaattattataaacatcagttggaataaccgtcaacgttgtacctgaatcaa |
14183436 |
T |
|
| Q |
136 |
ttatgatgttaccttcatcatcaccaccttccgaagagcctccaaattctactcttttgtttccaacact |
205 |
Q |
| |
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|||||||||||||| |||| |||||| | ||||| ||| ||||||||| ||||||||| |||||||| |
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| T |
14183435 |
ttatgatgttacct---tcatgaccaccatttgaagacccttcaaattctattcttttgttaccaacact |
14183369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 24 - 205
Target Start/End: Complemental strand, 40718304 - 40718126
Alignment:
| Q |
24 |
aattgttgattaggatcatcaacacgatctagtttcaccaaatccaccacagctgattccaagttagtatagacgtcggatggtataagtgtcaatgttg |
123 |
Q |
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||||||||| | |||||||||||||| ||||||||||| | || |||| ||||||||||| ||| |||| | | ||||| | || ||||| |||| |
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| T |
40718304 |
aattgttgagttggatcatcaacacgctctagtttcacagattctgccacggctgattccaaattattataaatattagatggcaaaatcgtcaacgttg |
40718205 |
T |
|
| Q |
124 |
tacctgaatcaattatgatgttaccttcatcatcaccaccttccgaagagcctccaaattctactcttttgtttccaacact |
205 |
Q |
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|||||||||||||||||||||||| | ||||||| ||| | ||||| | |||||||||| |||||||||||||||||| |
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| T |
40718204 |
tacctgaatcaattatgatgttac---cctcatcactaccatttgaagatctgccaaattctattcttttgtttccaacact |
40718126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 161
Target Start/End: Complemental strand, 14192404 - 14192360
Alignment:
| Q |
117 |
aatgttgtacctgaatcaattatgatgttaccttcatcatcacca |
161 |
Q |
| |
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||||||||||| |||||||||||||||||||| |||| ||||||| |
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| T |
14192404 |
aatgttgtacccgaatcaattatgatgttaccctcattatcacca |
14192360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 14192492 - 14192436
Alignment:
| Q |
29 |
ttgattaggatcatcaacacgatctagtttcaccaaatccaccacagctgattccaa |
85 |
Q |
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|||| ||||||| |||||||| |||| ||||||||||| |||||||| |||||||| |
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| T |
14192492 |
ttgagtaggatcgtcaacacgttctaacttcaccaaatctaccacagcagattccaa |
14192436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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