View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1907_low_43 (Length: 207)
Name: NF1907_low_43
Description: NF1907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1907_low_43 |
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Alignment Details
Target: chr7 (Bit Score: 151; Significance: 4e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 11 - 188
Target Start/End: Complemental strand, 19795088 - 19794910
Alignment:
| Q |
11 |
catcatcagctccctccctccctcatttgttaccatctcctcttccaccctttctgatttttatcttcttatttttagcttctcgtctttcgtaccgtgg |
110 |
Q |
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| T |
19795088 |
catcatcagctccctccctccctcatttgttaccatctcctcttccaccctttctgatttttatctccttatttttagcttctcgtccttcgtaccgtgg |
19794989 |
T |
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| Q |
111 |
tttattttcaacaagaaa-atattccgcgtgggtgatttcagattgaagcagttaatgtttgcttcgttttcttccatg |
188 |
Q |
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|||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
19794988 |
tttattttcaacaagaaagatattcggcgtgggtgatttcaaattgaagcagttaatttttgcttcgttttcttccatg |
19794910 |
T |
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Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 11 - 188
Target Start/End: Original strand, 38634319 - 38634497
Alignment:
| Q |
11 |
catcatcagctccctccctccctcatttgttaccatctcctcttccaccctttctgatttttatcttcttatttttagcttctcgtctttcgtaccgtgg |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| || ||||||||| |
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| T |
38634319 |
catcatcagctccctccctccctcatttgttaccatctcctcttccaccctttctaatttttatctccttatttttagcttctcgtccttggtaccgtgg |
38634418 |
T |
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| Q |
111 |
tttattttcaacaagaaa-atattccgcgtgggtgatttcagattgaagcagttaatgtttgcttcgttttcttccatg |
188 |
Q |
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|||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
38634419 |
tttattttcaacaagaaagatattcggcgtgggtgatttcaaattgaagcagttaatttttgcttcgttttcttccatg |
38634497 |
T |
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