View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1907_low_6 (Length: 468)
Name: NF1907_low_6
Description: NF1907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1907_low_6 |
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| [»] scaffold0370 (1 HSPs) |
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Alignment Details
Target: scaffold0370 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: scaffold0370
Description:
Target: scaffold0370; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 19 - 459
Target Start/End: Complemental strand, 12950 - 12510
Alignment:
| Q |
19 |
tttaagacatgaataagctgttcttgacaagtcaaaagccaattgtaagttaccttgatttggtgttttatacttttcttcaaggagtcatacttgcaag |
118 |
Q |
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| T |
12950 |
tttaagacatgaataagctgttcttgacaagtcaaaagccaattgtaagttaccttgatttggtgttttatacttttcttcaaggagtcatacttgcaag |
12851 |
T |
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| Q |
119 |
ctctttccatatgttggatttggaattgttcaatttctatcacgagcttctgccgatcattcaaataattccctctaatcatctcctccaagtttttaac |
218 |
Q |
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| T |
12850 |
ctctttccatatgttggatttggaattgttcaatttctatcacgagcttctgccggtcattcaaataattccctctaatcatctcctccaagtttttaac |
12751 |
T |
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| Q |
219 |
tttccgagtaaagaatatactacccccgttacgcaataactgtagcatttcacaattatacgcagattaggaaaatgtaatcaatgaaagaaatataatg |
318 |
Q |
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| T |
12750 |
tttccgagtaaagaatatactacccccgttacgcaataactatagcatttcacaattatacgcagattaggaaaatgtaatcaatgaaagaaatataatg |
12651 |
T |
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| Q |
319 |
atgattttattatcaaatcatcaatattagttattggtttattctcattgtcatagatagaatagaaaatacgagattgtttcgtctagtattaattagt |
418 |
Q |
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| T |
12650 |
atgattttattatcaaatcatcaatattagttattggtttattctcattatcatagatagaatagaaaatacgagattgtttcgtctagtattaattagt |
12551 |
T |
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| Q |
419 |
ggtataattaaaagaaacaataaaaattacattagtattat |
459 |
Q |
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| T |
12550 |
ggtataattaaaagaaacaataaaaattacattagtattat |
12510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 38633729 - 38633673
Alignment:
| Q |
116 |
aagctctttccatatgttggatttggaattgttcaatttctatcacgagcttctgcc |
172 |
Q |
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| T |
38633729 |
aagctctttccatatattgaatttgaaattgttcaatttctctcaggagcttctgcc |
38633673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 120 - 167
Target Start/End: Complemental strand, 38690404 - 38690357
Alignment:
| Q |
120 |
tctttccatatgttggatttggaattgttcaatttctatcacgagctt |
167 |
Q |
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| T |
38690404 |
tctttccatatgtttgacttgaaattgttcaatttctatcacgagctt |
38690357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 53 - 110
Target Start/End: Complemental strand, 38637853 - 38637796
Alignment:
| Q |
53 |
aaagccaattgtaagttaccttgatttggtgttttatacttttcttcaaggagtcata |
110 |
Q |
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| T |
38637853 |
aaagccaattataagttaccttgattttgtcttctatacgtttcttcaaggattcata |
38637796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 110
Target Start/End: Complemental strand, 38589705 - 38589668
Alignment:
| Q |
73 |
ttgatttggtgttttatacttttcttcaaggagtcata |
110 |
Q |
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| T |
38589705 |
ttgatttggtcttttataattttcttcaaggagtcata |
38589668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 38633805 - 38633765
Alignment:
| Q |
70 |
accttgatttggtgttttatacttttcttcaaggagtcata |
110 |
Q |
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| T |
38633805 |
accttgatttggtcttttataattttcttcaaggattcata |
38633765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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