View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1907_low_7 (Length: 438)
Name: NF1907_low_7
Description: NF1907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1907_low_7 |
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| [»] scaffold0836 (3 HSPs) |
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| [»] scaffold0043 (2 HSPs) |
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| [»] scaffold1236 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 18 - 423
Target Start/End: Complemental strand, 18029569 - 18029161
Alignment:
| Q |
18 |
agatggcagtggcaacgacaatattgtcttcccacaattaaaagagctctacgttgaaaattgtgggaaattagaatacatatttgggcacattgatgat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18029569 |
agatggcagtggcaacgacaatattgtcttcccacaattaaaagagctctacgttgaaaattgtgggaaattagaatacatatttgggcacattgatgat |
18029470 |
T |
|
| Q |
118 |
agtgatgatcatcaaaactacaatcctcatcttccagctttgaaatgtctcaagctttgcagactcccaagtttaactggcatgtgtaccaaaaactatc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18029469 |
agtgatgatcatcaaaactacaatcctcatcttccagctttgaaatgtctcaagctttgcagactcccaagtttaactggcatgtgtaccaaaaactatc |
18029370 |
T |
|
| Q |
218 |
gcacgacgtttccacctttggcggtacttgaactcattaattgcacccagtttgatattaaatctattggtgatttctttgtcaaggtatccacc---ct |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
18029369 |
gcacgacgtttccacctttggcggtacttgaactcattaattgcacccagtttgatattaaatctattggtgatttctttgtcaaggtatccacctttct |
18029270 |
T |
|
| Q |
315 |
ttctatatatttttattaatgtttctgaaactattaatcttacgggaagaatattggtattgatgtagagatatttgttagtatgagaaaaaacaatatt |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18029269 |
ttctatatatttttattaatgtttctgaaactattaatcttacgggaagaatattggtattgatgtagagatatttgttagtatgagaaaaaacaatatt |
18029170 |
T |
|
| Q |
415 |
attaagcag |
423 |
Q |
| |
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||||||||| |
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| T |
18029169 |
attaagcag |
18029161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 27396259 - 27396118
Alignment:
| Q |
18 |
agatggcagtggcaacgacaatattgtcttcccacaattaaaagagctctacgttgaaaattgtgggaaattagaatacatatttgggcacattgatgat |
117 |
Q |
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|||| ||||||||| ||||||| |||||||||| |||| ||| |||| | ||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27396259 |
agatagcagtggcagtgacaatagtgtcttcccaaaattgaaaaggctcgaagttaaaaattgtgggaaattagaatacatatttgggcacattgatgat |
27396160 |
T |
|
| Q |
118 |
agtgatgatcatcaaaactacaatcctcatcttccagctttg |
159 |
Q |
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|||||||||||||||||| |||||| |||||||||||||||| |
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| T |
27396159 |
agtgatgatcatcaaaaccacaatcttcatcttccagctttg |
27396118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 42 - 294
Target Start/End: Complemental strand, 18080009 - 18079745
Alignment:
| Q |
42 |
tgtcttcccacaattaaaagagctctacgttgaaaattgtgggaaattagaatacatatttgggcacattgatgatagtgatgatcatcaaaactacaat |
141 |
Q |
| |
|
|||||| ||| | |||||||||||| ||||||||||||||| ||| | ||||||||| |||| |||||| | | |||||||||||||||||| ||||| |
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| T |
18080009 |
tgtctttccaaacttaaaagagctcaacgttgaaaattgtgataaaatggaatacatagttggacacattaaagctagtgatgatcatcaaaatcacaat |
18079910 |
T |
|
| Q |
142 |
--------cc----tcatcttccagctttgaaatgtctcaagctttgcagactcccaagtttaactggcatgtgtaccaaaaactatcgcacgacgtttc |
229 |
Q |
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|| |||| ||||||||||| ||||||||||||| || || || |||||||||| ||||||||||||||| |||||||| || |||| |
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| T |
18079909 |
gaggtgacccgtattcattttccagctttggaatgtctcaagctctggagtcttccaagtttaatcggcatgtgtaccaaacgttatcgcacaacatttc |
18079810 |
T |
|
| Q |
230 |
cacctttggcggtacttgaactcattaattgcacccagtttgatattaaatctattggtgatttc |
294 |
Q |
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|||||| |||||||||| ||||| | ||||| | | ||||||||||| |||||||| ||||| |
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| T |
18079809 |
caccttcggcggtacttaaactcgatgattgcttcgtggttgatattaaacctattggtaatttc |
18079745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 42 - 141
Target Start/End: Complemental strand, 18714107 - 18714008
Alignment:
| Q |
42 |
tgtcttcccacaattaaaagagctctacgttgaaaattgtgggaaattagaatacatatttgggcacattgatgatagtgatgatcatcaaaactacaat |
141 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||| |||||| |||||| ||||||||||||||||||||||||| ||||||| |||| || ||| ||||| |
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| T |
18714107 |
tgtcttcccaaaattaaaagagctcgacgttgatgattgtgagaaattggaatacatatttgggcacattgatgctagtgatcatcaccacaaccacaat |
18714008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 227 - 356
Target Start/End: Complemental strand, 27396128 - 27395996
Alignment:
| Q |
227 |
ttccacctttggcggtacttgaactcattaattgcacccagtttgatattaaatctattggtgatttctttgtcaaggtatccacc---ctttctatata |
323 |
Q |
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||||| |||||| || |||||||||||| ||||||| |||| ||| | |||||| |||||||||||| ||||||||||| ||||| ||||| ||||| |
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| T |
27396128 |
ttccagctttggtggaacttgaactcatcaattgcagccagcttgttcttaaatatattggtgatttgattgtcaaggtacccacccatctttccatata |
27396029 |
T |
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| Q |
324 |
tttttattaatgtttctgaaactattaatctta |
356 |
Q |
| |
|
|||| |||||||||| |||||||| |||||||| |
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| T |
27396028 |
ttttcattaatgtttgtgaaactagtaatctta |
27395996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 42 - 215
Target Start/End: Original strand, 27372662 - 27372850
Alignment:
| Q |
42 |
tgtcttcccacaattaaaagagctctacgttgaaaattgtgggaaattagaatacatatttgggcacattgatgatagtgatgatcatcaaaactacaat |
141 |
Q |
| |
|
|||||||||| |||||||||| ||| | |||||| ||||| |||||| |||||||||||||||||||||||| || |||| |||| |||||| ||||| |
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| T |
27372662 |
tgtcttcccaaaattaaaagatctcgaagttgaatattgtacgaaattgaaatacatatttgggcacattgatgctactgatcatcaccaaaaccacaat |
27372761 |
T |
|
| Q |
142 |
----------cc-----tcatcttccagctttgaaatgtctcaagctttgcagactcccaagtttaactggcatgtgtaccaaaaacta |
215 |
Q |
| |
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|| ||||||||||||||||||||||||||||||| | ||||||| | ||||| ||||||||||||||| |||| |
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| T |
27372762 |
aatgaagtgacccactttcatcttccagctttgaaatgtctcaagcttcgtagactccgacgtttagtcggcatgtgtaccaaacacta |
27372850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 352
Target Start/End: Complemental strand, 18079686 - 18079648
Alignment:
| Q |
314 |
tttctatatatttttattaatgtttctgaaactattaat |
352 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||| |
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|
| T |
18079686 |
tttctatatatttttattaatgtttgtgaaattattaat |
18079648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0836 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: scaffold0836
Description:
Target: scaffold0836; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 42 - 141
Target Start/End: Complemental strand, 4669 - 4570
Alignment:
| Q |
42 |
tgtcttcccacaattaaaagagctctacgttgaaaattgtgggaaattagaatacatatttgggcacattgatgatagtgatgatcatcaaaactacaat |
141 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||| |||||| |||||| ||||||||||||||||||||||||| || | || |||| |||||| ||||| |
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| T |
4669 |
tgtcttcccaaaattaaaagagctcaacgttgatcattgtgagaaattggaatacatatttgggcacattgatgctactaatcatcaccaaaaccacaat |
4570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0836; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 141
Target Start/End: Complemental strand, 1147 - 1048
Alignment:
| Q |
42 |
tgtcttcccacaattaaaagagctctacgttgaaaattgtgggaaattagaatacatatttgggcacattgatgatagtgatgatcatcaaaactacaat |
141 |
Q |
| |
|
|||||||||| ||||||||| |||| || ||| |||||| |||| | ||||||||||||||||||||||||| || ||| |||| |||||| ||||| |
|
|
| T |
1147 |
tgtcttcccaaaattaaaagtgctccacattgcttattgtgagaaagtggaatacatatttgggcacattgatgctacagatcatcaccaaaaccacaat |
1048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0836; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 977 - 937
Alignment:
| Q |
197 |
gcatgtgtaccaaaaactatcgcacgacgtttccacctttg |
237 |
Q |
| |
|
|||||||||||||| |||||||||| ||||| ||||||||| |
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|
| T |
977 |
gcatgtgtaccaaacactatcgcacaacgttgccacctttg |
937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 144 - 294
Target Start/End: Complemental strand, 70703 - 70553
Alignment:
| Q |
144 |
tcatcttccagctttgaaatgtctcaagctttgcagactcccaagtttaactggcatgtgtaccaaaaactatcgcacgacgtttccacctttggcggta |
243 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||| |||||||| ||||||||||||||| ||||| |||| ||||| ||||||||| | || |
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|
| T |
70703 |
tcatcttccagctttgaaatatctcaagcttcatagactccaaagtttaatcggcatgtgtaccaaacactattgcacaacgttgccacctttgacacta |
70604 |
T |
|
| Q |
244 |
cttgaactcattaattgcacccagtttgatattaaatctattggtgatttc |
294 |
Q |
| |
|
||||||| | ||| || || ||||||||| |||||||||||||||| |
|
|
| T |
70603 |
gttgaactagtagcgtgctccaaggttgatattacatctattggtgatttc |
70553 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 78 - 141
Target Start/End: Complemental strand, 70784 - 70721
Alignment:
| Q |
78 |
ttgtgggaaattagaatacatatttgggcacattgatgatagtgatgatcatcaaaactacaat |
141 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||| || |||| |||| |||||| ||||| |
|
|
| T |
70784 |
ttgtgagaaattggaatacatatttgggcacattgatgctactgatcatcaccaaaaccacaat |
70721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1236 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: scaffold1236
Description:
Target: scaffold1236; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 42 - 141
Target Start/End: Original strand, 1937 - 2036
Alignment:
| Q |
42 |
tgtcttcccacaattaaaagagctctacgttgaaaattgtgggaaattagaatacatatttgggcacattgatgatagtgatgatcatcaaaactacaat |
141 |
Q |
| |
|
|||||||||| |||||||| ||||| | ||||| |||||| |||||| ||||||||||||||||||||||||| || |||| |||| ||||| ||||| |
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|
| T |
1937 |
tgtcttcccaaaattaaaaaagctcaaagttgatgattgtgagaaattggaatacatatttgggcacattgatgctactgatcatcacaaaaaccacaat |
2036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1236; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 2091 - 2143
Alignment:
| Q |
181 |
ctcccaagtttaactggcatgtgtaccaaaaactatcgcacgacgtttccacc |
233 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||| |||| ||||| ||||| |
|
|
| T |
2091 |
ctcccaagtttaatcggcatgtgtaccaaacactattgcacaacgttgccacc |
2143 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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