View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1907_low_8 (Length: 437)
Name: NF1907_low_8
Description: NF1907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1907_low_8 |
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| [»] chr8 (2 HSPs) |
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| [»] scaffold0415 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 177 - 437
Target Start/End: Original strand, 13212197 - 13212457
Alignment:
| Q |
177 |
gtgattaagtgaataacatttttggttaaaaaggaggacgagcacttccaccccaataaccttcagctggtaattggcatgaattgagaagattttgagg |
276 |
Q |
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| T |
13212197 |
gtgattaagtgaataacatttttggttaaaaaggaggacgagcacttccaccccaataaccttcagctggtaattggcatgaattgagaagattttgagg |
13212296 |
T |
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| Q |
277 |
aactccatggaaaagtgatgaagcattaggatctgctacaagttgttgctgttgctggttctgctgctgttattgttgacttcccatggttcccggtgac |
376 |
Q |
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| T |
13212297 |
aactccatggaaaagtgatgaagcattaggatctgctacaagttgttgctgttgctggttctgctgctgttgttgttgacttcccatggttcccggtgac |
13212396 |
T |
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| Q |
377 |
cctaaccctccatttcctggcacattcactggtgttccttcatcttctaaaggtagccttt |
437 |
Q |
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| T |
13212397 |
cctaaccctccatttcctggcacattcactggtgtttcttcatcttctaaaggtagccttt |
13212457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 13212019 - 13212103
Alignment:
| Q |
1 |
tcatcaagtagtcaacttaataccatgatcaaagaaaagtcttcaatttaaactaagttataaggagaatgaacaagtgatagat |
85 |
Q |
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| T |
13212019 |
tcatcaagtagtcaacttaataccatgatcaaagaaaagtcttcaatttaaactaagttataaggagaatgaacaagtgatagat |
13212103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0415 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0415
Description:
Target: scaffold0415; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 204 - 281
Target Start/End: Complemental strand, 13555 - 13478
Alignment:
| Q |
204 |
aaaaaggaggacgagcacttccaccccaataaccttcagctggtaattggcatgaattgagaagattttgaggaactc |
281 |
Q |
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| T |
13555 |
aaaatggaggacgagcacttccacaccaataaccttcatgtagtaattggtatgaattgtgaaaattttgaagaactc |
13478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 204 - 281
Target Start/End: Original strand, 29845934 - 29846011
Alignment:
| Q |
204 |
aaaaaggaggacgagcacttccaccccaataaccttcagctggtaattggcatgaattgagaagattttgaggaactc |
281 |
Q |
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| T |
29845934 |
aaaatggaggacgagcacttccacaccaataaccttcatgtagtaattggtatgaattgtgaaaattttgaagaactc |
29846011 |
T |
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