View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1907_low_9 (Length: 407)
Name: NF1907_low_9
Description: NF1907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1907_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 14 - 336
Target Start/End: Original strand, 39092624 - 39092945
Alignment:
| Q |
14 |
aacctgtggcgccacaaccatgcacaatctgcaatagagactttgaaacatctgatttccatacatcccaacagcagcaactagtccctcttttggatca |
113 |
Q |
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| T |
39092624 |
aacctgtagcgccacaaccatgaacaatctgaaatagagactttgaaacatctgatttccatacatccaaacagcagcaactagtccctcttttggatca |
39092723 |
T |
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| Q |
114 |
tgaatttcataggttttcttctaggttacagttgcgcaacatttttctagcaattgtcctaatatgatcaaagtgcatttagcttctgctacataacacg |
213 |
Q |
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| T |
39092724 |
tgaatttcataggttttcttctaggttacaattgcacaacatttttctagcaattgtcctaatatgatcaaagtgcatttagcttctgctacataacacg |
39092823 |
T |
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| Q |
214 |
cgatattttttaagttctgacataaaagaatatagagattattcgttactcttcaaccttaatatggtattctccgataatttaggttggtatgcataaa |
313 |
Q |
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| T |
39092824 |
cgatattttttaagttctgacat-aaagaatataaagattattcgttactcttcaaccttagtatggtattctccgataatttaggttggtatgcataaa |
39092922 |
T |
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| Q |
314 |
tgagaaatccgtgttggtgacta |
336 |
Q |
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| T |
39092923 |
tgagaaaccagtgttggtgacta |
39092945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 14865465 - 14865401
Alignment:
| Q |
56 |
ttgaaacatctgatttccatacatcccaacagcagcaactagtccctcttttggatcatgaattt |
120 |
Q |
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| T |
14865465 |
ttgaaatatttgatttccagacatcttaacagcaacaactaatccctcttttggatcatgaattt |
14865401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 9363502 - 9363555
Alignment:
| Q |
67 |
gatttccatacatcccaacagcagcaactagtccctcttttggatcatgaattt |
120 |
Q |
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| T |
9363502 |
gatttccatacatcctaatagcaacaactaatccctattttggatcatgaattt |
9363555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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