View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19081_high_2 (Length: 479)
Name: NF19081_high_2
Description: NF19081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19081_high_2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 11 - 479
Target Start/End: Complemental strand, 53620951 - 53620483
Alignment:
| Q |
11 |
atcatcatttgacattgattcagaaggactaagaatccaagagatgcgttctaacttgatcaaagaatcatcgtgccaagaagatactcttttcaatttt |
110 |
Q |
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| T |
53620951 |
atcatcatttgacattgattcagaaggactaagaatccaagagatgcgttctaacttgatcaaagaatcatcgtgccaagaagatactcttttcaatttt |
53620852 |
T |
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| Q |
111 |
tgacccaactcagaccatctggtggctttcttccagcgctgctcaaaattagttagtatatcatatgcagcaggcccttcgattttgcaatgtagatcat |
210 |
Q |
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| T |
53620851 |
tgacccaactcagaccatctggtggctttcttccagcgctgctcaaaattagttagtatatcatatgcagcaggcccttcgattttgcaatgtagatcat |
53620752 |
T |
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| Q |
211 |
gccatggttgccttggacccttggttccggcctattattaaaatggaagataaaaagaaacctcacttggtaagggagtacactggtgatctcaatctca |
310 |
Q |
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| T |
53620751 |
gccatggttgccttggacccttggttcctgcctattattaaaatggaagataaaaagaaacctcacttggtaagagagtacactggtgatctcaatctca |
53620652 |
T |
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| Q |
311 |
atatttaaaaaatcttagaataatttatgtttatgaaatatgtatcaattacatagaaagcttcacttaagctgttgtagttactgactgttaagttagt |
410 |
Q |
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| T |
53620651 |
atatttaaaaaatcttagaataatttatgtttatgaaatatgtatcaattacatagaaagcttcacttaagctgttgtagttactgactgttaagttagt |
53620552 |
T |
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| Q |
411 |
ttgggattagttgacttagttagacactcactaaccccttatcatgtgtataattatctaactcatgtt |
479 |
Q |
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| T |
53620551 |
ttgggattagttgacttagttagacactcactaaccccttatcatgtgtataattatctaactcatgtt |
53620483 |
T |
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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 36841068 - 36841127
Alignment:
| Q |
167 |
tatatcatatgcagcaggcccttcgattttgcaatgtagatcatgccatggttgccttgg |
226 |
Q |
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| T |
36841068 |
tatatcatatgcagccggaccttcaattttgcaatgtaagtcatgccatggttgccttgg |
36841127 |
T |
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