View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19081_high_4 (Length: 368)
Name: NF19081_high_4
Description: NF19081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19081_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 24185442 - 24185788
Alignment:
| Q |
1 |
aagaatataggcacaaacaatgttatatctaaccatgcaggataatgttgtcaatgtaaattataaaggaagaattttctatgttttacataatcatttt |
100 |
Q |
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| T |
24185442 |
aagaaaataggcacaaacaatgttatatctaaccatgcaggataatgttgtcaatgtaaattataaaggaagaattttctatgttttacataatcatttt |
24185541 |
T |
|
| Q |
101 |
ctaacatcactagtgctatttcgtgcaaatgcatagaaaaatagtattctgatatcaagttcctgttttgacatatagcaggagaagccgcatccgcatc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
24185542 |
ctaacatcactagtgctatttcgtgcaaatgcatagaaaaatagtattctgatatcaagttcctgttttgacatatagcaggagaag------ctgcatc |
24185635 |
T |
|
| Q |
201 |
cgcatcaaagccaaagctgtcaccaagcaaatccttctcttcctcaaactgttcttccccatcctctcctttcttccagaggttgaagcatcatgactca |
300 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24185636 |
cgcatcaaagccaaagctgtcaccaagcaaatcctcctcttcctcaaactgttcttccccatcctctcctttcttccagaggttgaagcatcatgactca |
24185735 |
T |
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| Q |
301 |
gaagaagaccatggccagaatcagaagaaatcagttatcaccaaagtaaagga |
353 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24185736 |
gaagaagaccatggccagaatcagaagaaatcagttatcaccaaagtaaagga |
24185788 |
T |
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