View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19081_low_1 (Length: 496)

Name: NF19081_low_1
Description: NF19081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19081_low_1
NF19081_low_1
[»] chr2 (5 HSPs)
chr2 (369-479)||(28220359-28220472)
chr2 (236-360)||(28218023-28218147)
chr2 (252-355)||(8178731-8178834)
chr2 (289-355)||(45328894-45328960)
chr2 (288-347)||(16291553-16291612)
[»] chr4 (3 HSPs)
chr4 (231-360)||(48624748-48624877)
chr4 (309-355)||(27452402-27452448)
chr4 (305-338)||(16001023-16001056)
[»] chr5 (4 HSPs)
chr5 (231-355)||(25924-26048)
chr5 (231-355)||(1289747-1289873)
chr5 (252-355)||(7090193-7090296)
chr5 (256-354)||(21913203-21913301)
[»] chr3 (4 HSPs)
chr3 (231-355)||(51449923-51450047)
chr3 (231-355)||(52137129-52137253)
chr3 (231-323)||(3367764-3367855)
chr3 (288-359)||(9257038-9257109)
[»] chr8 (3 HSPs)
chr8 (289-355)||(15217515-15217581)
chr8 (256-349)||(21239700-21239793)
chr8 (285-352)||(13587653-13587721)
[»] chr1 (1 HSPs)
chr1 (252-355)||(49349652-49349755)
[»] chr6 (2 HSPs)
chr6 (231-355)||(6080387-6080511)
chr6 (289-355)||(20429914-20429980)
[»] scaffold0001 (1 HSPs)
scaffold0001 (290-355)||(440839-440904)


Alignment Details
Target: chr2 (Bit Score: 82; Significance: 2e-38; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 369 - 479
Target Start/End: Original strand, 28220359 - 28220472
Alignment:
Q  369 gttaccattgtccaagcttctctattcaacttcgggaagattgatttttggctccgtgaagttgaccgtgaaatcaccatccaat----gaaagaatcaa 464  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    ||||||||||     
T  28220359 gttaccatcgtccaagcttctctattcaacttcgggaagattgatttt-ggctccgtgaagttgaccgtgaaatcaccatccaatgaaagaaagaatcag 28220457  T
Q  465 agatggttccaatct 479  Q
    |||||||||||||||    
T  28220458 agatggttccaatct 28220472  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 236 - 360
Target Start/End: Original strand, 28218023 - 28218147
Alignment:
Q  236 aatcttcttgtatgacttcctaataagaagaaaatatatctgagaagaagtcaccccactcttatatgcgataagatgctcctctcttttcctaaaacac 335  Q
    |||||||| || ||| |||||||||||||  |||| |||||||||| ||||||||||| ||||  ||| ||||||||| || |||||||||||||||||     
T  28218023 aatcttctcgtttgatttcctaataagaaagaaatctatctgagaataagtcaccccattcttgcatgtgataagatgttcatctcttttcctaaaacat 28218122  T
Q  336 gtattagttatagtaagatcgaaac 360  Q
    |||||| |||||||| |||| ||||    
T  28218123 gtattaattatagtaggatcaaaac 28218147  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 252 - 355
Target Start/End: Complemental strand, 8178834 - 8178731
Alignment:
Q  252 ttcctaataagaagaaaatatatctgagaagaagtcaccccactcttatatgcgataagatgctcctctcttttcctaaaacacgtattagttatagtaa 351  Q
    |||||||||||||  |||| |||||||||| | |  ||||||||||| || | ||||| |||||||||| ||||||| ||||| ||||||| ||||||||    
T  8178834 ttcctaataagaaagaaatctatctgagaacatgagaccccactcttgtaagtgataaaatgctcctctattttcctgaaacaagtattagctatagtaa 8178735  T
Q  352 gatc 355  Q
    ||||    
T  8178734 gatc 8178731  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 289 - 355
Target Start/End: Original strand, 45328894 - 45328960
Alignment:
Q  289 ccccactcttatatgcgataagatgctcctctcttttcctaaaacacgtattagttatagtaagatc 355  Q
    |||||||||| || | ||| ||||||||||||||||||||||||||||||||||  |||||||||||    
T  45328894 ccccactcttgtaagtgatgagatgctcctctcttttcctaaaacacgtattagcgatagtaagatc 45328960  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 288 - 347
Target Start/End: Complemental strand, 16291612 - 16291553
Alignment:
Q  288 accccactcttatatgcgataagatgctcctctcttttcctaaaacacgtattagttata 347  Q
    ||||||||||| || | |||||||||||||||||||||||| ||||| ||||||| ||||    
T  16291612 accccactcttgtaagtgataagatgctcctctcttttcctgaaacaagtattagctata 16291553  T

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Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 231 - 360
Target Start/End: Original strand, 48624748 - 48624877
Alignment:
Q  231 aaaccaatcttcttgtatgacttcctaataagaagaaaatatatctgagaagaagtcaccccactcttatatgcgataagatgctcctctcttttcctaa 330  Q
    |||| ||||||| |||  || |||||||||||||  |||| |||||||||| | |  ||||||||||| || | ||| |||||||||||||||||||| |    
T  48624748 aaacaaatcttcctgtcagatttcctaataagaaagaaatctatctgagaacatgagaccccactcttgtaagtgattagatgctcctctcttttcctga 48624847  T
Q  331 aacacgtattagttatagtaagatcgaaac 360  Q
    |||| ||||||| |||||||||||| ||||    
T  48624848 aacaagtattagctatagtaagatcaaaac 48624877  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 355
Target Start/End: Original strand, 27452402 - 27452448
Alignment:
Q  309 agatgctcctctcttttcctaaaacacgtattagttatagtaagatc 355  Q
    |||||||| ||||||||||||||||| ||||||| ||||||||||||    
T  27452402 agatgctcatctcttttcctaaaacatgtattagctatagtaagatc 27452448  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 305 - 338
Target Start/End: Complemental strand, 16001056 - 16001023
Alignment:
Q  305 gataagatgctcctctcttttcctaaaacacgta 338  Q
    ||||||||||||||||||||||||||||||||||    
T  16001056 gataagatgctcctctcttttcctaaaacacgta 16001023  T

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Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 231 - 355
Target Start/End: Complemental strand, 26048 - 25924
Alignment:
Q  231 aaaccaatcttcttgtatgacttcctaataagaagaaaatatatctgagaagaagtcaccccactcttatatgcgataagatgctcctctcttttcctaa 330  Q
    |||| ||||||  ||||||| ||||||||||||| ||||| |||||||||| |  | | | ||||||| || | |||||||||||||||||| |||| ||    
T  26048 aaacaaatctttatgtatgaattcctaataagaaaaaaatctatctgagaacatattatcgcactcttgtaagtgataagatgctcctctctgttccaaa 25949  T
Q  331 aacacgtattagttatagtaagatc 355  Q
    |||||||||||| |||| |||||||    
T  25948 aacacgtattagctataataagatc 25924  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 231 - 355
Target Start/End: Original strand, 1289747 - 1289873
Alignment:
Q  231 aaaccaatcttcttgtatgacttcctaataagaa-gaaa-atatatctgagaagaagtcaccccactcttatatgcgataagatgctcctctcttttcct 328  Q
    |||| ||||||| |||  || ||||||||||||| |||| ||||||||||||| | |  ||| ||||||| || | ||||||||||||||||||||||||    
T  1289747 aaacaaatcttcctgtcggatttcctaataagaaagaaatatatatctgagaacatgagacctcactcttgtaagtgataagatgctcctctcttttcct 1289846  T
Q  329 aaaacacgtattagttatagtaagatc 355  Q
     ||||| ||||||| ||||||||||||    
T  1289847 gaaacaagtattagctatagtaagatc 1289873  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 252 - 355
Target Start/End: Complemental strand, 7090296 - 7090193
Alignment:
Q  252 ttcctaataagaagaaaatatatctgagaagaagtcaccccactcttatatgcgataagatgctcctctcttttcctaaaacacgtattagttatagtaa 351  Q
    |||||||||||||  ||||  ||||||||| | || | ||| ||||| |||| ||||||||||||| |||||||| || |||||||||||| || |||||    
T  7090296 ttcctaataagaaagaaattcatctgagaacatgttaacccgctcttgtatgtgataagatgctccactcttttcatagaacacgtattagctacagtaa 7090197  T
Q  352 gatc 355  Q
    ||||    
T  7090196 gatc 7090193  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 354
Target Start/End: Complemental strand, 21913301 - 21913203
Alignment:
Q  256 taataagaagaaaatatatctgagaagaagtcaccccactcttatatgcgataagatgctcctctcttttcctaaaacacgtattagttatagtaagat 354  Q
    |||||||||  |||| |||||| ||| | | ||||||||| ||||||  ||||||||| ||| |||||| | |||| ||| |||||| |||||||||||    
T  21913301 taataagaaagaaatttatctgtgaacatgccaccccactattatatatgataagatgttccactctttacttaaagcacttattagctatagtaagat 21913203  T

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Target: chr3 (Bit Score: 49; Significance: 8e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 231 - 355
Target Start/End: Original strand, 51449923 - 51450047
Alignment:
Q  231 aaaccaatcttcttgtatgacttcctaataagaagaaaatatatctgagaagaagtcaccccactcttatatgcgataagatgctcctctcttttcctaa 330  Q
    |||| ||||||| |||  || |||||||||||||  |||| |||||||||| | |  ||||||||||| || | |||||||||||||||| ||||||| |    
T  51449923 aaacaaatcttcctgtcggatttcctaataagaaagaaatctatctgagaacatgagaccccactcttgtaagtgataagatgctcctctattttcctga 51450022  T
Q  331 aacacgtattagttatagtaagatc 355  Q
    |||| ||||||| ||||||||||||    
T  51450023 aacaagtattagctatagtaagatc 51450047  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 231 - 355
Target Start/End: Complemental strand, 52137253 - 52137129
Alignment:
Q  231 aaaccaatcttcttgtatgacttcctaataagaagaaaatatatctgagaagaagtcaccccactcttatatgcgataagatgctcctctcttttcctaa 330  Q
    |||| ||||||| |||  || |||||||||||||  |||| || ||||||| | |  |||||||||||  | | |||| ||||||||||||||||||| |    
T  52137253 aaacaaatcttcctgtcggatttcctaataagaaagaaatctacctgagaacatgagaccccactcttgaaagtgataggatgctcctctcttttcctga 52137154  T
Q  331 aacacgtattagttatagtaagatc 355  Q
    |||| ||||||| ||||||||||||    
T  52137153 aacaagtattagctatagtaagatc 52137129  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 323
Target Start/End: Complemental strand, 3367855 - 3367764
Alignment:
Q  231 aaaccaatcttcttgtatgacttcctaataagaagaaaatatatctgagaagaagtcaccccactcttatatgcgataagatgctcctctctt 323  Q
    |||| ||||||| |||  |||||| |||||||||  |||| ||||| |||| | |||||| ||||||| ||||||||||||||||||||||||    
T  3367855 aaacaaatcttcatgtcagacttcttaataagaaagaaatctatct-agaacatgtcaccgcactcttgtatgcgataagatgctcctctctt 3367764  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 359
Target Start/End: Complemental strand, 9257109 - 9257038
Alignment:
Q  288 accccactcttatatgcgataagatgctcctctcttttcctaaaacacgtattagttatagtaagatcgaaa 359  Q
    ||||||||||| || | ||||| |||||| |||||||| |||||||| ||||||| ||  ||||||||||||    
T  9257109 accccactcttgtaagtgataaaatgctcatctctttttctaaaacatgtattagctacggtaagatcgaaa 9257038  T

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Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 289 - 355
Target Start/End: Original strand, 15217515 - 15217581
Alignment:
Q  289 ccccactcttatatgcgataagatgctcctctcttttcctaaaacacgtattagttatagtaagatc 355  Q
    |||||||||| || | ||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  15217515 ccccactcttgtaagtgatgagatgctcctctcttttcctaaaacacgtattagctatagtaagatc 15217581  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 256 - 349
Target Start/End: Original strand, 21239700 - 21239793
Alignment:
Q  256 taataagaagaaaatatatctgagaagaagtcaccccactcttatatgcgataagatgctcctctcttttcctaaaacacgtattagttatagt 349  Q
    |||||| || || ||||||||||||| | ||||||| | |||| || | |||||||||||| |||||||| ||||||||| |||||| ||||||    
T  21239700 taataaaaaaaatatatatctgagaacatgtcacccaattcttgtaagtgataagatgctcatctctttttctaaaacacatattagctatagt 21239793  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 285 - 352
Target Start/End: Complemental strand, 13587721 - 13587653
Alignment:
Q  285 gtcaccccactcttatatgcgataagatgctcctctcttttcct-aaaacacgtattagttatagtaag 352  Q
    |||||||| ||||| || | ||||||||||||||||||||| || |||| | ||||||| |||||||||    
T  13587721 gtcacccctctcttgtaagtgataagatgctcctctctttttctaaaaaaatgtattagctatagtaag 13587653  T

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Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 252 - 355
Target Start/End: Original strand, 49349652 - 49349755
Alignment:
Q  252 ttcctaataagaagaaaatatatctgagaagaagtcaccccactcttatatgcgataagatgctcctctcttttcctaaaacacgtattagttatagtaa 351  Q
    |||||||||||||  |||| |||||||||| | |  ||||||||||| || | |||||||||||| ||| ||||||| ||||| ||||||| ||||||||    
T  49349652 ttcctaataagaaagaaatctatctgagaacatgagaccccactcttgtaagtgataagatgctcatctattttcctgaaacaagtattagctatagtaa 49349751  T
Q  352 gatc 355  Q
    ||||    
T  49349752 gatc 49349755  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 231 - 355
Target Start/End: Complemental strand, 6080511 - 6080387
Alignment:
Q  231 aaaccaatcttcttgtatgacttcctaataagaagaaaatatatctgagaagaagtcaccccactcttatatgcgataagatgctcctctcttttcctaa 330  Q
    |||| ||||||| |||  || |||||||||||||  |||| ||| |||||| | |  ||| ||||||| || | |||||||||||||||||||||||  |    
T  6080511 aaacaaatcttcctgtcggatttcctaataagaaataaatctatttgagaacatgagacctcactcttgtaagtgataagatgctcctctcttttcccga 6080412  T
Q  331 aacacgtattagttatagtaagatc 355  Q
    |||| ||||||| ||||||||||||    
T  6080411 aacaagtattagctatagtaagatc 6080387  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 289 - 355
Target Start/End: Original strand, 20429914 - 20429980
Alignment:
Q  289 ccccactcttatatgcgataagatgctcctctcttttcctaaaacacgtattagttatagtaagatc 355  Q
    ||||||||||||| | ||| ||||| ||||||||||||||||| |||||||||  ||||||||||||    
T  20429914 ccccactcttataagtgatgagatggtcctctcttttcctaaagcacgtattaactatagtaagatc 20429980  T

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Target: scaffold0001 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 290 - 355
Target Start/End: Complemental strand, 440904 - 440839
Alignment:
Q  290 cccactcttatatgcgataagatgctcctctcttttcctaaaacacgtattagttatagtaagatc 355  Q
    ||||||||| || | ||| |||||||||||||||||||||||| ||||||||   |||||||||||    
T  440904 cccactcttgtaagtgatgagatgctcctctcttttcctaaaatacgtattaacgatagtaagatc 440839  T

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