View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19081_low_3 (Length: 452)
Name: NF19081_low_3
Description: NF19081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19081_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Complemental strand, 45694625 - 45694191
Alignment:
| Q |
1 |
gaagtttttaaaaaatgtacggagctaacagtagcctcttcctctgtttgctctgacaatggcgtgcatagaagttcagatgatgctaatcaaaatttga |
100 |
Q |
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| T |
45694625 |
gaagtttttaaaaaatgtacggagctaacagtagcctcttcctctgtttgctctgacaatggcgtgcatagaagttcagatgatgctaatcaaaatttga |
45694526 |
T |
|
| Q |
101 |
agcgaaaaaatctggactctgaggattctgagtggcacagtgaagtaaatatcttataattaagttgtcctatttcttgaattatcttatgagtatggct |
200 |
Q |
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| T |
45694525 |
agcgaaaaaatctggactctgaggattctgagtggcacagtgaagtaaatatcttataattaagttgtcctatttcttgaattatcttatgagtatggct |
45694426 |
T |
|
| Q |
201 |
tattttattgtgttctactataatcaa-nnnnnnnngttaatttgtaggattttgaggatgaatcaatcggtgttaaaagaactgatcatggacgaggtg |
299 |
Q |
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| T |
45694425 |
tattttattgtgttctactataatcaatttttttttgttaatttataggattttgaggatgaatcaatcggtgttaaaagaactgatcatggacgaggtg |
45694326 |
T |
|
| Q |
300 |
ttacgggttcgaagaaaaatcgttcaaccgaagtgcacaatctatctgaaagggtgagtaagagtaagatcatcttccatttgtgccttttaagaaaagt |
399 |
Q |
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| T |
45694325 |
ttacgggctcgaagaaaaatcgttcaaccgaagtgcacaatctatctgaaagggtgagtaagagtaagatcatcttccatttgtgccttttaagaaaagt |
45694226 |
T |
|
| Q |
400 |
agaaataacaaactttccatcttaagtgtatgttt |
434 |
Q |
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| T |
45694225 |
agaaataacaaactttccatcttaagtgtatgttt |
45694191 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 361
Target Start/End: Original strand, 37935089 - 37935121
Alignment:
| Q |
329 |
gaagtgcacaatctatctgaaagggtgagtaag |
361 |
Q |
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| T |
37935089 |
gaagtgcataatctatctgaaagggtgagtaag |
37935121 |
T |
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