View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19082_high_6 (Length: 241)
Name: NF19082_high_6
Description: NF19082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19082_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 44154273 - 44154504
Alignment:
| Q |
1 |
aaataagtaagaaagaagagtagtaatacttccgtagaaatagtggaaatcatcaggggtcatgtatttgatggagtttgacttgtctttgaacacataa |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44154273 |
aaataagtcagaaagaagagtagtaatacttccgtagaaatagtggaaatcatcaggggtcatgtatttgatggagtttgacttgtctttgaacacataa |
44154372 |
T |
|
| Q |
101 |
tattctccttctactgttactgcatcattagcatccatcaatc--------aatcaaacattaattaccaacaacaacacattcaaaaatcataatgaaa |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44154373 |
tattctccttctactgttactgcatcattagcatccatcaatcaatcaattaatcaaacattaattaccaacaacaacacattcaaaaatcataatgaaa |
44154472 |
T |
|
| Q |
193 |
cattctaaattcaaacaaatgaaatcagaaag |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
44154473 |
cattctaaattcaaacaaatgaaatcagaaag |
44154504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 40898998 - 40899221
Alignment:
| Q |
1 |
aaataagtaagaaagaagagtagtaatacttccgtagaaatagtggaaatcatcaggggtcatgtatttgatggagtttgacttgtctttgaacacataa |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
40898998 |
aaataagtcagaaagaagagtagtaatacttcggtagaaatagtggaaatcatcaggggtcatgcatttgatggagtttgatttgtctttgaacacataa |
40899097 |
T |
|
| Q |
101 |
tattctccttctactgttactgcatcattagcatccatcaatcaatcaaacattaattaccaacaacaacacattcaaaaatcataatgaaacattctaa |
200 |
Q |
| |
|
|||||||||| ||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40899098 |
tattctccttttactgttacagcatcgttagcatccatcaatcaatcaaaaattaattaccaacaacaacacattcaaaaatcataatgaaacattctaa |
40899197 |
T |
|
| Q |
201 |
attcaaacaaatgaaatcagaaag |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
40899198 |
attcaaacaaatgaaatcagaaag |
40899221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 161 - 223
Target Start/End: Complemental strand, 40893829 - 40893767
Alignment:
| Q |
161 |
caacaacaacacattcaaaaatcataatgaaacattctaaattcaaacaaatgaaatcagaaa |
223 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||| | ||||||||||||||||||| |
|
|
| T |
40893829 |
caacaacaacacattcaaaaatcataattaaaccatctaaactaaaacaaatgaaatcagaaa |
40893767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 40894013 - 40893952
Alignment:
| Q |
9 |
aagaaagaagagtagtaatacttccgtagaaatagtggaaatcatcaggggtcatgtatttg |
70 |
Q |
| |
|
|||| |||||||||||||||||| ||| || ||||| ||||||| ||| ||||| ||||||| |
|
|
| T |
40894013 |
aagatagaagagtagtaatactttcgtggacatagttgaaatcagcagaggtcaggtatttg |
40893952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University