View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19082_low_3 (Length: 365)
Name: NF19082_low_3
Description: NF19082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19082_low_3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 3 - 365
Target Start/End: Complemental strand, 50400564 - 50400202
Alignment:
| Q |
3 |
gatggacatcatcactcaaaaaagacaacctgagagcttttccgccaacaaacaactgatgcacacatattatagatatataacagactgttctcattca |
102 |
Q |
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| T |
50400564 |
gatggaaatcatcactcaaaaaagacaacctgagagcttttccgccaacaaacaactgatgcacacatattatagatatataacagactgttctcattca |
50400465 |
T |
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| Q |
103 |
aaagatgaatgatactttttactcatgaagattatatcaaactccaggtgttggcccttgtagtattgagcttaatcatcttcaggctctaccgaaaaat |
202 |
Q |
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| T |
50400464 |
aaagatgaatgatactttttactcatgaagattatatcaaactccaggtgttggcccttgtagtattgagcttaatcatcttcaggctctaccgaaaaat |
50400365 |
T |
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| Q |
203 |
ctggctcttcaggcttttgcaacttgggcatctctgcatccttgatcttctgaacccctctccttgtgtttgcagcaaatcttgaagccagtatagtgac |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
50400364 |
ctggctcttcaggcttttgcaacttgggcatctctgcatccttgatcttctgaacccctttccttgtgtttgcagcaaatcttgaagccagtatagtgac |
50400265 |
T |
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| Q |
303 |
acctagattctgttttacttgtgcggtgtttgaattcaccaaactgcggtgctcttcttcctc |
365 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50400264 |
acctagattctgttttacttgtgcggtgtttgaattcaccaaactgcggtgctcttcttcctc |
50400202 |
T |
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