View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19082_low_5 (Length: 243)

Name: NF19082_low_5
Description: NF19082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19082_low_5
NF19082_low_5
[»] chr1 (10 HSPs)
chr1 (129-240)||(16179652-16179763)
chr1 (156-196)||(16787120-16787160)
chr1 (158-201)||(33191361-33191404)
chr1 (161-201)||(16112400-16112440)
chr1 (129-196)||(16360561-16360626)
chr1 (126-201)||(24281965-24282038)
chr1 (156-196)||(25960531-25960571)
chr1 (162-205)||(14780219-14780262)
chr1 (158-196)||(15572793-15572831)
chr1 (129-196)||(17120851-17120915)
[»] chr7 (19 HSPs)
chr7 (129-237)||(8978344-8978452)
chr7 (129-196)||(1847641-1847708)
chr7 (129-202)||(6043118-6043191)
chr7 (129-240)||(13759305-13759415)
chr7 (129-196)||(39272503-39272570)
chr7 (129-207)||(3326933-3327011)
chr7 (130-202)||(2564553-2564625)
chr7 (129-192)||(18663122-18663183)
chr7 (158-201)||(3735283-3735326)
chr7 (156-199)||(9257111-9257154)
chr7 (156-199)||(9313099-9313142)
chr7 (129-201)||(3190404-3190474)
chr7 (160-205)||(6014253-6014298)
chr7 (130-201)||(7319005-7319075)
chr7 (129-181)||(7397850-7397900)
chr7 (158-190)||(8312920-8312952)
chr7 (129-196)||(9730952-9731017)
chr7 (156-196)||(10941848-10941888)
chr7 (160-196)||(31493603-31493639)
[»] chr8 (7 HSPs)
chr8 (130-204)||(29381702-29381776)
chr8 (129-191)||(2637696-2637756)
chr8 (133-240)||(24110082-24110189)
chr8 (129-196)||(27660017-27660084)
chr8 (135-205)||(23868824-23868894)
chr8 (129-196)||(24520998-24521065)
chr8 (160-208)||(21315311-21315359)
[»] chr2 (11 HSPs)
chr2 (129-238)||(27541251-27541360)
chr2 (127-196)||(27908516-27908585)
chr2 (129-201)||(28929328-28929400)
chr2 (129-240)||(17675035-17675146)
chr2 (130-196)||(23006572-23006636)
chr2 (162-200)||(25884743-25884781)
chr2 (129-190)||(32086034-32086093)
chr2 (156-201)||(23933021-23933066)
chr2 (156-196)||(15339940-15339980)
chr2 (127-196)||(9761787-9761855)
chr2 (156-196)||(31804176-31804216)
[»] scaffold0032 (1 HSPs)
scaffold0032 (129-196)||(102741-102808)
[»] chr5 (9 HSPs)
chr5 (156-207)||(17170926-17170977)
chr5 (132-196)||(19052036-19052100)
chr5 (129-196)||(24243374-24243441)
chr5 (156-206)||(34488316-34488366)
chr5 (158-196)||(17470647-17470685)
chr5 (167-196)||(24164427-24164456)
chr5 (163-192)||(24266371-24266400)
chr5 (163-192)||(24343002-24343031)
chr5 (129-196)||(24661918-24661983)
[»] chr4 (8 HSPs)
chr4 (158-202)||(5956639-5956683)
chr4 (129-237)||(7582950-7583058)
chr4 (129-196)||(25024108-25024173)
chr4 (129-179)||(17107298-17107348)
chr4 (156-201)||(19092991-19093036)
chr4 (129-196)||(5679900-5679965)
chr4 (130-196)||(9850785-9850849)
chr4 (156-196)||(17336404-17336444)
[»] scaffold0638 (1 HSPs)
scaffold0638 (132-203)||(165-236)
[»] chr6 (7 HSPs)
chr6 (129-196)||(9517421-9517488)
chr6 (129-196)||(20144441-20144508)
chr6 (129-196)||(22188331-22188398)
chr6 (158-196)||(21688217-21688255)
chr6 (152-196)||(14638256-14638300)
chr6 (126-188)||(22568503-22568563)
chr6 (129-201)||(6630032-6630103)
[»] scaffold0054 (1 HSPs)
scaffold0054 (130-196)||(72723-72789)
[»] chr3 (4 HSPs)
chr3 (129-200)||(16245062-16245131)
chr3 (132-174)||(19910111-19910153)
chr3 (129-205)||(41509147-41509221)
chr3 (156-196)||(8267634-8267674)
[»] scaffold0062 (1 HSPs)
scaffold0062 (129-190)||(42568-42628)
[»] scaffold0008 (1 HSPs)
scaffold0008 (129-201)||(55552-55623)


Alignment Details
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 129 - 240
Target Start/End: Complemental strand, 16179763 - 16179652
Alignment:
Q  129 gtgacattactaagattgaatagtaactctgttgaacctaggatgtaactagttattaattaaggaaataagcgtcttctgagattaaccttttatcgaa 228  Q
    |||| |||||||||| ||| ||||||||||| |||||||||||||||||| |||| |||||| ||||  |||||||| | | || ||| |||||||||||    
T  16179763 gtgaaattactaagactgagtagtaactctgctgaacctaggatgtaacttgttagtaattagggaatcaagcgtctccggggaataaacttttatcgaa 16179664  T
Q  229 ccattctcttga 240  Q
    ||||||||||||    
T  16179663 ccattctcttga 16179652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 196
Target Start/End: Original strand, 16787120 - 16787160
Alignment:
Q  156 tctgttgaacctaggatgtaactagttattaattaaggaaa 196  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  16787120 tctgttgaacctaagatgtaactagttattaattaaggaaa 16787160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 201
Target Start/End: Complemental strand, 33191404 - 33191361
Alignment:
Q  158 tgttgaacctaggatgtaactagttattaattaaggaaataagc 201  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||    
T  33191404 tgttgaacctaggatgtaactagttattaattagggaaacaagc 33191361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 16112440 - 16112400
Alignment:
Q  161 tgaacctaggatgtaactagttattaattaaggaaataagc 201  Q
    |||||||||||||||||||||||||||||| ||||| ||||    
T  16112440 tgaacctaggatgtaactagttattaattagggaaacaagc 16112400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 196
Target Start/End: Complemental strand, 16360626 - 16360561
Alignment:
Q  129 gtgacattactaagattgaatagtaactctgttgaacctaggatgtaactagttattaattaaggaaa 196  Q
    ||||||||||||| ||||| ||  || | ||||||||||| |||||||||||||||||| ||||||||    
T  16360626 gtgacattactaatattgagta--aaatatgttgaacctacgatgtaactagttattaactaaggaaa 16360561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 201
Target Start/End: Complemental strand, 24282038 - 24281965
Alignment:
Q  126 aatgtgacattactaagattgaatagtaactctgttgaacctaggatgtaactagttattaattaaggaaataagc 201  Q
    |||||||||||||||| ||||| ||  || |||  |||||||||||| ||||||||||||||||| ||||| ||||    
T  24282038 aatgtgacattactaatattgagta--aaatcttatgaacctaggatataactagttattaattagggaaacaagc 24281965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 196
Target Start/End: Original strand, 25960531 - 25960571
Alignment:
Q  156 tctgttgaacctaggatgtaactagttattaattaaggaaa 196  Q
    ||||||||||||||||||||||||||| ||||||| |||||    
T  25960531 tctgttgaacctaggatgtaactagttgttaattagggaaa 25960571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 205
Target Start/End: Complemental strand, 14780262 - 14780219
Alignment:
Q  162 gaacctaggatgtaactagttattaattaaggaaataagcgtct 205  Q
    |||||||||||||||||||||| |||||| ||||| ||||||||    
T  14780262 gaacctaggatgtaactagttagtaattagggaaacaagcgtct 14780219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 196
Target Start/End: Original strand, 15572793 - 15572831
Alignment:
Q  158 tgttgaacctaggatgtaactagttattaattaaggaaa 196  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  15572793 tgttgaacctagtatgtaactagttattaattagggaaa 15572831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 196
Target Start/End: Original strand, 17120851 - 17120915
Alignment:
Q  129 gtgacattactaagattgaatagtaactctgttgaacctaggatgtaactagttattaattaaggaaa 196  Q
    ||||||||||||| ||||| ||  || ||||| |||||||||||||||||||||  ||||||||||||    
T  17120851 gtgacattactaatattgagta--aaatctgt-gaacctaggatgtaactagttgctaattaaggaaa 17120915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 129 - 237
Target Start/End: Original strand, 8978344 - 8978452
Alignment:
Q  129 gtgacattactaagattgaatagtaactctgttgaacctaggatgtaactagttattaattaaggaaataagcgtcttctgagattaaccttttatcgaa 228  Q
    |||| |||||||||| ||| |||||| |||| ||||||||||||||||||||||| |||||||||||| |||||||||| | || ||| | |  ||||||    
T  8978344 gtgagattactaagactgagtagtaaatctgctgaacctaggatgtaactagttagtaattaaggaaacaagcgtcttcggggaataaacctagatcgaa 8978443  T
Q  229 ccattctct 237  Q
    |||||||||    
T  8978444 ccattctct 8978452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 129 - 196
Target Start/End: Original strand, 1847641 - 1847708
Alignment:
Q  129 gtgacattactaagattgaatagtaactctgttgaacctaggatgtaactagttattaattaaggaaa 196  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||  ||| ||||||||||||    
T  1847641 gtgacattactaaaattgagtagtaactctgttgaacctaggatgtaactgattagtaattaaggaaa 1847708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 129 - 202
Target Start/End: Complemental strand, 6043191 - 6043118
Alignment:
Q  129 gtgacattactaagattgaatagtaactctgttgaacctaggatgtaactagttattaattaaggaaataagcg 202  Q
    ||||||||||||||||||| ||||||||||| | ||||||||||| |||| |||| |||||||||||| |||||    
T  6043191 gtgacattactaagattgagtagtaactctgctaaacctaggatgcaactggttagtaattaaggaaacaagcg 6043118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 129 - 240
Target Start/End: Original strand, 13759305 - 13759415
Alignment:
Q  129 gtgacattactaagattgaatagtaactctgttgaacctaggatgtaactagttattaattaaggaaataagcgtcttctgagattaaccttttatcgaa 228  Q
    ||||||||||||| ||||| ||||||||||| |||||||||||||||||  |||| |||||| ||||| |||| |||   | || | ||| |||||||||    
T  13759305 gtgacattactaatattgagtagtaactctgctgaacctaggatgtaacaggttagtaattagggaaacaagcatctctagggaatgacc-tttatcgaa 13759403  T
Q  229 ccattctcttga 240  Q
    ||||||||||||    
T  13759404 ccattctcttga 13759415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 129 - 196
Target Start/End: Original strand, 39272503 - 39272570
Alignment:
Q  129 gtgacattactaagattgaatagtaactctgttgaacctaggatgtaactagttattaattaaggaaa 196  Q
    ||||||||||||| | ||| ||||||||||| ||||||||| ||||||||||||| ||||||||||||    
T  39272503 gtgacattactaacactgagtagtaactctgctgaacctagtatgtaactagttaataattaaggaaa 39272570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 207
Target Start/End: Original strand, 3326933 - 3327011
Alignment:
Q  129 gtgacattactaagattgaatagtaactctgttgaacctaggatgtaactagttattaattaaggaaataagcgtcttc 207  Q
    |||| |||||||||| ||| |||||||||||   |||||||||||||||| |||| |||||||||||| ||||| ||||    
T  3326933 gtgaaattactaagactgagtagtaactctgccaaacctaggatgtaactggttagtaattaaggaaacaagcgacttc 3327011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 202
Target Start/End: Complemental strand, 2564625 - 2564553
Alignment:
Q  130 tgacattactaagattgaatagtaactctgttgaacctaggatgtaactagttattaattaaggaaataagcg 202  Q
    |||||||||||||| ||| | ||||||||| | ||||||||||||||||  ||| |||||||||||| |||||    
T  2564625 tgacattactaagactgagtggtaactctgctaaacctaggatgtaactgattagtaattaaggaaacaagcg 2564553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 18663183 - 18663122
Alignment:
Q  129 gtgacattactaagattgaatagtaactctgttgaacctaggatgtaactagttattaattaag 192  Q
    ||||||||||||| ||||| ||  || |||||||||| ||||||||||||||||||||||||||    
T  18663183 gtgacattactaatattgagta--aagtctgttgaacataggatgtaactagttattaattaag 18663122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 201
Target Start/End: Complemental strand, 3735326 - 3735283
Alignment:
Q  158 tgttgaacctaggatgtaactagttattaattaaggaaataagc 201  Q
    ||||||||||||||||||||| ||||||||||| ||||| ||||    
T  3735326 tgttgaacctaggatgtaactggttattaattagggaaacaagc 3735283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 199
Target Start/End: Original strand, 9257111 - 9257154
Alignment:
Q  156 tctgttgaacctaggatgtaactagttattaattaaggaaataa 199  Q
    |||| |||||||| ||||||||||||||||||||| ||||||||    
T  9257111 tctgctgaacctaagatgtaactagttattaattagggaaataa 9257154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 199
Target Start/End: Complemental strand, 9313142 - 9313099
Alignment:
Q  156 tctgttgaacctaggatgtaactagttattaattaaggaaataa 199  Q
    |||| |||||||| ||||||||||||||||||||| ||||||||    
T  9313142 tctgctgaacctaagatgtaactagttattaattagggaaataa 9313099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 201
Target Start/End: Original strand, 3190404 - 3190474
Alignment:
Q  129 gtgacattactaagattgaatagtaactctgttgaacctaggatgtaactagttattaattaaggaaataagc 201  Q
    ||||||||||||| ||||| ||  || | |||||||| || ||||||||||||||||||||| ||||| ||||    
T  3190404 gtgacattactaatattgagta--aaatatgttgaacatatgatgtaactagttattaattagggaaacaagc 3190474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 205
Target Start/End: Complemental strand, 6014298 - 6014253
Alignment:
Q  160 ttgaacctaggatgtaactagttattaattaaggaaataagcgtct 205  Q
    ||||| ||||||||||||||||||||||||| ||||| ||| ||||    
T  6014298 ttgaagctaggatgtaactagttattaattagggaaacaagtgtct 6014253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 201
Target Start/End: Complemental strand, 7319075 - 7319005
Alignment:
Q  130 tgacattactaagattgaatagtaactctgttgaacctaggatgtaactagt-tattaattaaggaaataagc 201  Q
    |||||||||||| ||||| ||  || | |||||||||||||||||||||||| ||||||||| ||||| ||||    
T  7319075 tgacattactaatattgagta--aaatatgttgaacctaggatgtaactagtgtattaattagggaaacaagc 7319005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 7397900 - 7397850
Alignment:
Q  129 gtgacattactaagattgaatagtaactctgttgaacctaggatgtaactagt 181  Q
    ||||||||||||| ||||| ||  || ||||||||||||||||||||||||||    
T  7397900 gtgacattactaatattgagta--aaatctgttgaacctaggatgtaactagt 7397850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 190
Target Start/End: Original strand, 8312920 - 8312952
Alignment:
Q  158 tgttgaacctaggatgtaactagttattaatta 190  Q
    ||||||||||| |||||||||||||||||||||    
T  8312920 tgttgaacctaagatgtaactagttattaatta 8312952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 196
Target Start/End: Original strand, 9730952 - 9731017
Alignment:
Q  129 gtgacattactaagattgaatagtaactctgttgaacctaggatgtaactagttattaattaaggaaa 196  Q
    ||||||||||||| ||||| ||  || |||| ||| ||||||| ||||||||||| ||||||||||||    
T  9730952 gtgacattactaatattgagta--aaatctgctgagcctaggaggtaactagttaataattaaggaaa 9731017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 196
Target Start/End: Original strand, 10941848 - 10941888
Alignment:
Q  156 tctgttgaacctaggatgtaactagttattaattaaggaaa 196  Q
    ||||||||||| |||| ||||||||||| ||||||||||||    
T  10941848 tctgttgaaccaaggaggtaactagttaataattaaggaaa 10941888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 31493639 - 31493603
Alignment:
Q  160 ttgaacctaggatgtaactagttattaattaaggaaa 196  Q
    |||||| |||| |||||||||||||||||||||||||    
T  31493639 ttgaacataggttgtaactagttattaattaaggaaa 31493603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 130 - 204
Target Start/End: Original strand, 29381702 - 29381776
Alignment:
Q  130 tgacattactaagattgaatagtaactctgttgaacctaggatgtaactagttattaattaaggaaataagcgtc 204  Q
    |||||||||||| | ||| |||||||||||||||||||||||||||||| |||| |||||||||||| |||||||    
T  29381702 tgacattactaacactgagtagtaactctgttgaacctaggatgtaactggttagtaattaaggaaagaagcgtc 29381776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 129 - 191
Target Start/End: Complemental strand, 2637756 - 2637696
Alignment:
Q  129 gtgacattactaagattgaatagtaactctgttgaacctaggatgtaactagttattaattaa 191  Q
    ||||||||||||| ||||| ||  || ||||||||||||||||||||||||||||||||||||    
T  2637756 gtgacattactaatattgagta--aaatctgttgaacctaggatgtaactagttattaattaa 2637696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 133 - 240
Target Start/End: Original strand, 24110082 - 24110189
Alignment:
Q  133 cattactaagattgaatagtaactctgttgaacctaggatgtaactagttattaattaaggaaataagcgtcttctgagattaaccttttatcgaaccat 232  Q
    ||||||||||| ||| ||||||||||  |||||||||||||||||| |||| |||||| | |   |||||||| | |||| ||| | |||||| ||||||    
T  24110082 cattactaagactgagtagtaactctactgaacctaggatgtaactggttagtaattaggtacgcaagcgtctccagagaataaacctttatcaaaccat 24110181  T
Q  233 tctcttga 240  Q
    ||||||||    
T  24110182 tctcttga 24110189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 129 - 196
Target Start/End: Complemental strand, 27660084 - 27660017
Alignment:
Q  129 gtgacattactaagattgaatagtaactctgttgaacctaggatgtaactagttattaattaaggaaa 196  Q
    ||||||||||||||| ||| ||||||||||| | |||||||||||||||| |||| ||| ||||||||    
T  27660084 gtgacattactaagactgagtagtaactctgctaaacctaggatgtaactggttagtaactaaggaaa 27660017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 135 - 205
Target Start/End: Original strand, 23868824 - 23868894
Alignment:
Q  135 ttactaagattgaatagtaactctgttgaacctaggatgtaactagttattaattaaggaaataagcgtct 205  Q
    |||||||||||||  |||||||||| |||||| ||||||||||| |||| |||||||||||| || |||||    
T  23868824 ttactaagattgaggagtaactctggtgaaccaaggatgtaactggttagtaattaaggaaacaaacgtct 23868894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 196
Target Start/End: Original strand, 24520998 - 24521065
Alignment:
Q  129 gtgacattactaagattgaatagtaactctgttgaacctaggatgtaactagttattaattaaggaaa 196  Q
    ||||| |||||||||  |||||||||||||| |||||||| |||||||||  ||| ||||||||||||    
T  24520998 gtgacgttactaagaccgaatagtaactctgctgaacctaagatgtaactgattagtaattaaggaaa 24521065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 21315359 - 21315311
Alignment:
Q  160 ttgaacctaggatgtaactagttattaattaaggaaataagcgtcttct 208  Q
    |||||||||||| ||||||||||| | |||||||||| ||| |||||||    
T  21315359 ttgaacctaggaggtaactagttagtgattaaggaaacaagtgtcttct 21315311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 129 - 238
Target Start/End: Original strand, 27541251 - 27541360
Alignment:
Q  129 gtgacattactaagattgaatagtaactctgttgaacctaggatgtaactagttattaattaaggaaataagcgtcttctgagattaaccttttatcgaa 228  Q
    ||||||||||||||| ||| | ||||||||| |||||||||||||||| |  ||| |||||| ||||| |||||||| ||| || ||| | |||||||||    
T  27541251 gtgacattactaagactgagtggtaactctgctgaacctaggatgtaattgattactaattatggaaacaagcgtctcctgggaataaacctttatcgaa 27541350  T
Q  229 ccattctctt 238  Q
    ||||||||||    
T  27541351 ccattctctt 27541360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 127 - 196
Target Start/End: Original strand, 27908516 - 27908585
Alignment:
Q  127 atgtgacattactaagattgaatagtaactctgttgaacctaggatgtaactagttattaattaaggaaa 196  Q
    |||||||||||| |||| ||| ||||||||| |  ||||||||||||||||| |||||||||||||||||    
T  27908516 atgtgacattacaaagactgagtagtaactcagcggaacctaggatgtaactggttattaattaaggaaa 27908585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 28929400 - 28929328
Alignment:
Q  129 gtgacattactaagattgaatagtaactctgttgaacctaggatgtaactagttattaattaaggaaataagc 201  Q
    |||||||||||||||||||  ||||||| || |||||||| |||||||||| ||| |||||||||||| ||||    
T  28929400 gtgacattactaagattgagcagtaactttgctgaacctatgatgtaactacttagtaattaaggaaacaagc 28929328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 240
Target Start/End: Original strand, 17675035 - 17675146
Alignment:
Q  129 gtgacattactaagattgaatagtaactctgttgaacctaggatgtaactagttattaattaaggaaataagcgtcttctgagattaaccttttatcgaa 228  Q
    ||||||||||||||| ||| |||||||  || | |||||||||||||||| |||| ||| || ||||| |||||||||| | || |||   |||||||||    
T  17675035 gtgacattactaagactgagtagtaacgttgcttaacctaggatgtaactggttagtaaatagggaaacaagcgtcttcggggaataagactttatcgaa 17675134  T
Q  229 ccattctcttga 240  Q
     || ||||||||    
T  17675135 tcactctcttga 17675146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 196
Target Start/End: Original strand, 23006572 - 23006636
Alignment:
Q  130 tgacattactaagattgaatagtaactctgttgaacctaggatgtaactagttattaattaaggaaa 196  Q
    |||||||||||| ||||| ||  || | ||||||||||||||||||||||||||||||||| |||||    
T  23006572 tgacattactaatattgagta--aaatatgttgaacctaggatgtaactagttattaattagggaaa 23006636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 25884743 - 25884781
Alignment:
Q  162 gaacctaggatgtaactagttattaattaaggaaataag 200  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  25884743 gaacctaggatgtaactagttattaattagggaaataag 25884781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 190
Target Start/End: Complemental strand, 32086093 - 32086034
Alignment:
Q  129 gtgacattactaagattgaatagtaactctgttgaacctaggatgtaactagttattaatta 190  Q
    ||||||||||||| ||||| ||  || | |||||||||||||||||||||||||||||||||    
T  32086093 gtgacattactaatattgagta--aaatatgttgaacctaggatgtaactagttattaatta 32086034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 23933021 - 23933066
Alignment:
Q  156 tctgttgaacctaggatgtaactagttattaattaaggaaataagc 201  Q
    |||||||||| |||||||||||||||||||||||| ||||| ||||    
T  23933021 tctgttgaacttaggatgtaactagttattaattagggaaacaagc 23933066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 196
Target Start/End: Complemental strand, 15339980 - 15339940
Alignment:
Q  156 tctgttgaacctaggatgtaactagttattaattaaggaaa 196  Q
    |||| |||||||||||||||| |||||||||||||||||||    
T  15339980 tctgctgaacctaggatgtaaatagttattaattaaggaaa 15339940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 196
Target Start/End: Original strand, 9761787 - 9761855
Alignment:
Q  127 atgtgacattactaagattgaatagtaactctgttgaacctaggatgtaactagtt-attaattaaggaaa 196  Q
    ||||||||||||||| ||||||||  || |||||||||||||||| ||||||| || | ||||||||||||    
T  9761787 atgtgacattactaatattgaata--aaatctgttgaacctaggaggtaactatttaaataattaaggaaa 9761855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 196
Target Start/End: Original strand, 31804176 - 31804216
Alignment:
Q  156 tctgttgaacctaggatgtaactagttattaattaaggaaa 196  Q
    |||| ||||||||||| ||||||||||| ||||||||||||    
T  31804176 tctgctgaacctaggaggtaactagttagtaattaaggaaa 31804216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 129 - 196
Target Start/End: Original strand, 102741 - 102808
Alignment:
Q  129 gtgacattactaagattgaatagtaactctgttgaacctaggatgtaactagttattaattaaggaaa 196  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||| |||| |||||| |||||    
T  102741 gtgacattactaagactgagtagtaactctgttgaacctaggatgtaactggttagtaattagggaaa 102808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 156 - 207
Target Start/End: Original strand, 17170926 - 17170977
Alignment:
Q  156 tctgttgaacctaggatgtaactagttattaattaaggaaataagcgtcttc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  17170926 tctgttgaacctaggatgtaactagttattaattaaggaaataggcgacttc 17170977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 196
Target Start/End: Complemental strand, 19052100 - 19052036
Alignment:
Q  132 acattactaagattgaatagtaactctgttgaacctaggatgtaactagttattaattaaggaaa 196  Q
    |||||||||||| ||| ||||||||||| |||||||| |||||||||| ||| ||||||||||||    
T  19052100 acattactaagactgagtagtaactctgctgaacctaagatgtaactaattagtaattaaggaaa 19052036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 196
Target Start/End: Original strand, 24243374 - 24243441
Alignment:
Q  129 gtgacattactaagattgaatagtaactctgttgaacctaggatgtaactagttattaattaaggaaa 196  Q
    ||||||||| ||||| ||| ||||||||||| ||| |||||||||||||| |||| |||||| |||||    
T  24243374 gtgacattattaagactgagtagtaactctgctgatcctaggatgtaactggttagtaattagggaaa 24243441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 34488366 - 34488316
Alignment:
Q  156 tctgttgaacctaggatgtaactagttattaattaaggaaataagcgtctt 206  Q
    |||| |||||||||||||||||||||||||||||| ||||| ||| |||||    
T  34488366 tctgctgaacctaggatgtaactagttattaattagggaaacaagtgtctt 34488316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 196
Target Start/End: Original strand, 17470647 - 17470685
Alignment:
Q  158 tgttgaacctaggatgtaactagttattaattaaggaaa 196  Q
    ||||||| |||||||||||||| ||||||||||||||||    
T  17470647 tgttgaatctaggatgtaactaattattaattaaggaaa 17470685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 196
Target Start/End: Original strand, 24164427 - 24164456
Alignment:
Q  167 taggatgtaactagttattaattaaggaaa 196  Q
    ||||||||||||||||||||||||||||||    
T  24164427 taggatgtaactagttattaattaaggaaa 24164456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 192
Target Start/End: Original strand, 24266371 - 24266400
Alignment:
Q  163 aacctaggatgtaactagttattaattaag 192  Q
    ||||||||||||||||||||||||||||||    
T  24266371 aacctaggatgtaactagttattaattaag 24266400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 192
Target Start/End: Original strand, 24343002 - 24343031
Alignment:
Q  163 aacctaggatgtaactagttattaattaag 192  Q
    ||||||||||||||||||||||||||||||    
T  24343002 aacctaggatgtaactagttattaattaag 24343031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 196
Target Start/End: Original strand, 24661918 - 24661983
Alignment:
Q  129 gtgacattactaagattgaatagtaactctgttgaacctaggatgtaactagttattaattaaggaaa 196  Q
    ||||||||||||| ||||| ||  || |||| | || ||||||||||||||||||||||||| |||||    
T  24661918 gtgacattactaatattgagta--aaatctgctaaatctaggatgtaactagttattaattagggaaa 24661983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 5956683 - 5956639
Alignment:
Q  158 tgttgaacctaggatgtaactagttattaattaaggaaataagcg 202  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||    
T  5956683 tgttgaagctaggatgtaactagttattaattaaggaaacaagcg 5956639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 237
Target Start/End: Complemental strand, 7583058 - 7582950
Alignment:
Q  129 gtgacattactaagattgaatagtaactctgttgaacctaggatgtaactagttattaattaaggaaataagcgtcttctgagattaaccttttatcgaa 228  Q
    |||| |||||||||| ||| |||||| || | |||||||| ||||||||| |||| |||||||||||| || ||||||| | || ||| | |  ||||||    
T  7583058 gtgagattactaagactgagtagtaaatcagctgaacctatgatgtaactggttagtaattaaggaaacaaacgtcttcggggaataaacctagatcgaa 7582959  T
Q  229 ccattctct 237  Q
    |||||||||    
T  7582958 ccattctct 7582950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 196
Target Start/End: Complemental strand, 25024173 - 25024108
Alignment:
Q  129 gtgacattactaagattgaatagtaactctgttgaacctaggatgtaactagttattaattaaggaaa 196  Q
    ||||||||||||| ||||| ||  || |||| |||||||| |||||||||||||||||||||||||||    
T  25024173 gtgacattactaatattgagta--aaatctgctgaacctatgatgtaactagttattaattaaggaaa 25024108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 179
Target Start/End: Complemental strand, 17107348 - 17107298
Alignment:
Q  129 gtgacattactaagattgaatagtaactctgttgaacctaggatgtaacta 179  Q
    ||||||||||||| | ||| ||||||||||| |||||||||||||||||||    
T  17107348 gtgacattactaatactgagtagtaactctgctgaacctaggatgtaacta 17107298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 19093036 - 19092991
Alignment:
Q  156 tctgttgaacctaggatgtaactagttattaattaaggaaataagc 201  Q
    |||||||||| |||||||||||||||||||||||| ||||| ||||    
T  19093036 tctgttgaacataggatgtaactagttattaattagggaaacaagc 19092991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 196
Target Start/End: Complemental strand, 5679965 - 5679900
Alignment:
Q  129 gtgacattactaagattgaatagtaactctgttgaacctaggatgtaactagttattaattaaggaaa 196  Q
    ||||||||||||| ||||| ||  || | |||||||||||||||||||||||| |||||||| |||||    
T  5679965 gtgacattactaatattgagta--aaatttgttgaacctaggatgtaactagtaattaattagggaaa 5679900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 196
Target Start/End: Original strand, 9850785 - 9850849
Alignment:
Q  130 tgacattactaagattgaatagtaactctgttgaacctaggatgtaactagttattaattaaggaaa 196  Q
    |||||||||||| ||||| ||  || |||| ||||||| ||||||||||| ||||||||||||||||    
T  9850785 tgacattactaatattgagta--aaatctgatgaacctgggatgtaactatttattaattaaggaaa 9850849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 196
Target Start/End: Original strand, 17336404 - 17336444
Alignment:
Q  156 tctgttgaacctaggatgtaactagttattaattaaggaaa 196  Q
    |||||||||||||||| ||||||||||| ||||| ||||||    
T  17336404 tctgttgaacctaggaggtaactagttaataattcaggaaa 17336444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0638 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0638
Description:

Target: scaffold0638; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 203
Target Start/End: Original strand, 165 - 236
Alignment:
Q  132 acattactaagattgaatagtaactctgttgaacctaggatgtaactagttattaattaaggaaataagcgt 203  Q
    ||||||||||||   | ||||||||||| |||| ||||||||||||| |||| |||||||||||| ||||||    
T  165 acattactaagacgaagtagtaactctgctgaaactaggatgtaactggttagtaattaaggaaacaagcgt 236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 196
Target Start/End: Complemental strand, 9517488 - 9517421
Alignment:
Q  129 gtgacattactaagattgaatagtaactctgttgaacctaggatgtaactagttattaattaaggaaa 196  Q
    |||| |||||||||| ||| |||||||| || |||||||||||||||||| |||| |||||| |||||    
T  9517488 gtgatattactaagactgagtagtaactttgctgaacctaggatgtaactggttagtaattagggaaa 9517421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 196
Target Start/End: Original strand, 20144441 - 20144508
Alignment:
Q  129 gtgacattactaagattgaatagtaactctgttgaacctaggatgtaactagttattaattaaggaaa 196  Q
    ||||||||||||||| | | |||||| |||| |||||||||||||||||  |||| ||||||||||||    
T  20144441 gtgacattactaagactaagtagtaattctgctgaacctaggatgtaaccggttaataattaaggaaa 20144508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 196
Target Start/End: Complemental strand, 22188398 - 22188331
Alignment:
Q  129 gtgacattactaagattgaatagtaactctgttgaacctaggatgtaactagttattaattaaggaaa 196  Q
    ||||||||||||||| | | |||||| |||| |||||||||||||||||  |||| ||||||||||||    
T  22188398 gtgacattactaagactaagtagtaattctgctgaacctaggatgtaaccggttaataattaaggaaa 22188331  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 196
Target Start/End: Original strand, 21688217 - 21688255
Alignment:
Q  158 tgttgaacctaggatgtaactagttattaattaaggaaa 196  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  21688217 tgttgaacctaggatgtaactagttattaattagggaaa 21688255  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 14638300 - 14638256
Alignment:
Q  152 taactctgttgaacctaggatgtaactagttattaattaaggaaa 196  Q
    |||||||||||||||||||||||||||  ||| ||||||||||||    
T  14638300 taactctgttgaacctaggatgtaactgattagtaattaaggaaa 14638256  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 188
Target Start/End: Complemental strand, 22568563 - 22568503
Alignment:
Q  126 aatgtgacattactaagattgaatagtaactctgttgaacctaggatgtaactagttattaat 188  Q
    |||||||||||||||| | ||| ||  || |||||||||||||| ||||||||||||||||||    
T  22568563 aatgtgacattactaatactgagta--aaatctgttgaacctagaatgtaactagttattaat 22568503  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 201
Target Start/End: Original strand, 6630032 - 6630103
Alignment:
Q  129 gtgacattactaagattgaatagtaactctgttgaacctaggatgtaactag-ttattaattaaggaaataagc 201  Q
    ||||||||||||| ||||| ||  || ||| ||||||||||||||||||||| |||||||||| ||||| ||||    
T  6630032 gtgacattactaatattgagta--aaatctattgaacctaggatgtaactagtttattaattagggaaacaagc 6630103  T

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Target: scaffold0054 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 196
Target Start/End: Complemental strand, 72789 - 72723
Alignment:
Q  130 tgacattactaagattgaatagtaactctgttgaacctaggatgtaactagttattaattaaggaaa 196  Q
    |||||||||||||| | | ||||||||||  |||||||||||||||||  |||| ||||||||||||    
T  72789 tgacattactaagactaagtagtaactctcctgaacctaggatgtaaccggttaataattaaggaaa 72723  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 200
Target Start/End: Original strand, 16245062 - 16245131
Alignment:
Q  129 gtgacattactaagattgaatagtaactctgttgaacctaggatgtaactagttattaattaaggaaataag 200  Q
    ||||||||||||| ||||| ||  || | || ||||||||||| ||||||||||| ||||||||||||||||    
T  16245062 gtgacattactaatattgagta--aaatatgctgaacctaggaggtaactagttaataattaaggaaataag 16245131  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 174
Target Start/End: Complemental strand, 19910153 - 19910111
Alignment:
Q  132 acattactaagattgaatagtaactctgttgaacctaggatgt 174  Q
    |||||||||||| ||| ||||||||||| ||||||||||||||    
T  19910153 acattactaagactgagtagtaactctgctgaacctaggatgt 19910111  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 205
Target Start/End: Complemental strand, 41509221 - 41509147
Alignment:
Q  129 gtgacattactaagattgaatagtaactctgttgaacctaggatgtaactagttattaattaaggaaataagcgtct 205  Q
    ||||||||||||| ||||||||  || | |||||||| ||||| |||| |||||| |||||||||||| ||| ||||    
T  41509221 gtgacattactaatattgaata--aaatttgttgaacataggaggtaattagttaataattaaggaaacaagtgtct 41509147  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 196
Target Start/End: Complemental strand, 8267674 - 8267634
Alignment:
Q  156 tctgttgaacctaggatgtaactagttattaattaaggaaa 196  Q
    ||||||||||||| ||||||||| ||||||||||| |||||    
T  8267674 tctgttgaacctatgatgtaactcgttattaattagggaaa 8267634  T

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Target: scaffold0062 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 190
Target Start/End: Original strand, 42568 - 42628
Alignment:
Q  129 gtgacattactaagattgaatagtaactctgttgaacctaggatgtaactag-ttattaatta 190  Q
    ||||||||||||| ||||| ||  || ||||||||||||||||||||||||| ||||||||||    
T  42568 gtgacattactaatattgagta--aaatctgttgaacctaggatgtaactagtttattaatta 42628  T

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Target: scaffold0008 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 55623 - 55552
Alignment:
Q  129 gtgacattactaagattgaatagtaactctgttgaacctaggatgtaactag-ttattaattaaggaaataagc 201  Q
    ||||||||||||| ||||| ||  || |||| |||||||||||||||||||| |||||||||| ||||| ||||    
T  55623 gtgacattactaatattgagta--aaatctgctgaacctaggatgtaactagtttattaattagggaaacaagc 55552  T

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