View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19083_high_12 (Length: 378)
Name: NF19083_high_12
Description: NF19083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19083_high_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 21875685 - 21876056
Alignment:
| Q |
1 |
tacatggataaaatttgtgtcagagaatctgcacaaacacaaaggttgatgtaatcgttggatgctgttttaatgaagtgaatctgagaaaacacaaaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
21875685 |
tacatggataaaatttgtgtcagagaatctgcaccaacacaaaggttgatgtaatcgttggatgctgttttaatgaagtgaatctgagtaaacacaaaag |
21875784 |
T |
|
| Q |
101 |
tcaaaaacagaaacaaacaagccacatcgatcgtgtgtaacgggaaaatatgacacgttttatttataagactgcatgaaaaaataacgtgtcacttttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21875785 |
tcaaaaacagaaacaaacaagccacatcgatcgtgtgtaatgggaaaatatgacacgttttatttataagactgcatgaaaaaataacgtgtcacttttt |
21875884 |
T |
|
| Q |
201 |
acacaatcaagacaaggttagttaatttatatactttcattttgtcatctactgaaataattatcaataaagatgatcatgacatcacaaaacgctcgtg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21875885 |
acacaatcaagacaaggttagttaatttatatactttcattttgtcatctactgaaataattatcaataaagatgatcatgacatcacaaaacgctcgtg |
21875984 |
T |
|
| Q |
301 |
tgatcagtggtttcatgtcggccaatatatttttgggaatataaagaaatcataactaaaaagtattatcta |
372 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
21875985 |
tgatcagtggtttcatgtcggccaatgtatttttgggaatataaagaaatcataactaaaaaatattatcta |
21876056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University