View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19083_high_14 (Length: 359)
Name: NF19083_high_14
Description: NF19083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19083_high_14 |
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Alignment Details
Target: chr6 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 10 - 342
Target Start/End: Complemental strand, 5460917 - 5460585
Alignment:
| Q |
10 |
ataatactcaaggatctctttctagactcaaacttcaaaggtggaggaatttcaatcacaaattcactaagaatcaacatagacaattgttacatcacac |
109 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5460917 |
ataacactcaaggatctctttctagactcaaacttcaaaggtggaggaatttcaatcacaaattcactaagaatcaacatagacaattgttacatcacac |
5460818 |
T |
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| Q |
110 |
atttcatcacaaatggaattttagtccaaagtggtcatgaaacatacattagaaacactttcattggtcaacacataactgcaggaggtgacaaaaatga |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5460817 |
atttcatcacaaatggaattttagtccaaagtggtcatgaaacatacattagaaacactttcattggtcaacacataactgcaggaggtgacaaaaatga |
5460718 |
T |
|
| Q |
210 |
aagaaaattttcaggcattggaattagtcttcacgggaatgataatgcaattactgatgttgtgattttttctgctaatattggaattatgattactggt |
309 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5460717 |
aagaaaattttcaggcattggaattagtcttcaagggaatgataatgcaattactgatgttgtgattttttctgctaatattggaattatgattactggt |
5460618 |
T |
|
| Q |
310 |
caagctaacacaatttctggtgtacattgttat |
342 |
Q |
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| T |
5460617 |
caagctaacacaatttctggtgtacattgttat |
5460585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 16 - 341
Target Start/End: Original strand, 15160155 - 15160480
Alignment:
| Q |
16 |
ctcaaggatctctttctagactcaaacttcaaaggtggaggaatttcaatcacaaattcactaagaatcaacatagacaattgttacatcacacatttca |
115 |
Q |
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| T |
15160155 |
ctcaaggatctcttattggattcaaactttagaggaggaggcatttcagtcataaattcactcagaacaaacatagacaattgttacattacacatttca |
15160254 |
T |
|
| Q |
116 |
tcacaaatggaattttagtccaaagtggtcatgaaacatacattagaaacactttcattggtcaacacataactgcaggaggtgacaaaaatgaaagaaa |
215 |
Q |
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|| ||||||||||||||||||||||| |||||||||||||| |||||| ||||| |||| || ||||||||||| ||||| || ||||| ||||| || |
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| T |
15160255 |
ctaccaatggaattttagtccaaagtggccatgaaacatacataagaaactctttccttggccagcacataactgccggaggcgataaaaacgaaaggaa |
15160354 |
T |
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| Q |
216 |
attttcaggcattggaattagtcttcacgggaatgataatgcaattactgatgttgtgattttttctgctaatattggaattatgattactggtcaagct |
315 |
Q |
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|| ||||||| ||||| | | || || || |||||||| | || |||||||| ||||| |||||| ||| ||||| ||| | ||||||||||| |
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| T |
15160355 |
tttctcaggcacaggaataaacatccaaggtaacgataatgctgtcaccgatgttgtaattttctctgctgctataggaatcatggtaactggtcaagca |
15160454 |
T |
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| Q |
316 |
aacacaatttctggtgtacattgtta |
341 |
Q |
| |
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|||||| ||||||||||||||||||| |
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| T |
15160455 |
aacacattttctggtgtacattgtta |
15160480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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