View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19083_high_17 (Length: 305)
Name: NF19083_high_17
Description: NF19083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19083_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 27399 - 27688
Alignment:
| Q |
1 |
aagataatagcaatattcttggcttggcctacggctacttgtgtcaaacagcttagaacatttctaagtttgacttgttacaacttaaaataaacatgtg |
100 |
Q |
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| T |
27399 |
aagataatagcaatattcttggcttggcctacgcctacttgtgtcaaacagcttagaacatttctaagtttgacttgttacaacttaaaataaacatgtg |
27498 |
T |
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| Q |
101 |
tccaaagtcattgctgattttacctttgatgactnnnnnnnggctgtgtccaacattcttgtgctagcacttgccaattccaatggagcattgctaatgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27499 |
tccaaagtcattgctgattttacctttgatgactaaaaaaaggccgtgtccaacattcttgtgctagcacttgccaattccaatggagcattgctaatgc |
27598 |
T |
|
| Q |
201 |
tgaccagtgaccctagcagcacatgcaatactatagcctatttcgttaagaagcagtacaaggttagctatggcttttgcatgtaaataa |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
27599 |
tgaccagtgaccctagcagcacatgcaatactatagcctatttcgttaagaagcagtacaagattagctatggcttttgcatgtaaataa |
27688 |
T |
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