View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19083_high_18 (Length: 303)
Name: NF19083_high_18
Description: NF19083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19083_high_18 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 11 - 284
Target Start/End: Complemental strand, 27823967 - 27823698
Alignment:
| Q |
11 |
cacagaaacacttaagccgaaagataaggtcatggtggagagttcattttctacatccttgaaaaacaaaggaatagtggaactccatatatgtgtaggg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27823967 |
cacagaaacacttaagccgaaagataaggtcatggtggagagttcattttctacatccttgaaaaacaaaggaatagtggaactccatatatgtgtaggg |
27823868 |
T |
|
| Q |
111 |
aaggatatatttataatgattgcattcatcattaatttattgaggtgttagaaaattagattgaaaataaaatatttagtgtgtattttgttacatggta |
210 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
27823867 |
aaggatatctttataatgattgcattcatcattaa-ttattgaggtgttagaaaattagattgaaaataaaa---ttagtatgtattttgttacatggta |
27823772 |
T |
|
| Q |
211 |
gacaatgctaaaagcgtcaattgaaactgattctgccattagaattgatagctttttatttgaaatatattttt |
284 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27823771 |
gacaatgttaaaagcgtcgattgaaactgattctgccattagaattgatagctttttatttgaaatatattttt |
27823698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University