View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19083_high_8 (Length: 477)
Name: NF19083_high_8
Description: NF19083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19083_high_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 21 - 464
Target Start/End: Complemental strand, 20460438 - 20459991
Alignment:
| Q |
21 |
gcccctatgtgtgtgtctgtttattctacgatgaaatcagattgtatgctcgaactgcttgtgtggatatattcagacacaaattgattgtatgccagaa |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
20460438 |
gcccctatgtgtgtgtctgtttattctacgatgaaatcagattgtatgctcgaactgcttgtgtggatatattcagacacacattgattgtatgccagaa |
20460339 |
T |
|
| Q |
121 |
atattgtattgccagaattattgtggcaactatgttgttttgtttattaattgtgatgtttggtcatcttgtcttttcaaaaacatcagtctttcta-at |
219 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
|
|
| T |
20460338 |
atattgtattgccagaattattgtgccaactatgttgttttgtttattaattgtgatgtttggtcatcttgtcttttcaaaaacttcagtctttctatat |
20460239 |
T |
|
| Q |
220 |
gatctagagaagtttggttgatgtatgggattttctattagtattaccacaatctgtgagaaagggagggataaaatcacatcctac--atgattatcaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
20460238 |
gatctagagaagtttggttgatgtatgggattttctattagtattaccacaatctgagagagagggagggataaaatcacatcctacatatgattatcat |
20460139 |
T |
|
| Q |
318 |
taccagaaatcagggagtatgnnnnnnntttcttgcataaaacctaacagaactt-ttcatttttaagataaaggcttcattttccaaatagttcacatc |
416 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
20460138 |
taccagaaatcagggagtatgaactagttttcttgcataaaacctaacagaacttattcatttctaagataaaggcttcattttccaaatagttcacatc |
20460039 |
T |
|
| Q |
417 |
ctaagatttacatgaaaagtaaagagattttcaaaagatttaaggcct |
464 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20460038 |
ctaagatttacatgaaaagtaaagagattttcaaaagatttaaggcct |
20459991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 38 - 266
Target Start/End: Complemental strand, 20277402 - 20277173
Alignment:
| Q |
38 |
tgtttattctacgatgaaatcagattgtatgctcgaactgcttgtgtggatatattcagacacaaattgattgtatgccagaaatattgtattgccagaa |
137 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
20277402 |
tgtttattctatgatgaaatcaaattgtatgctcgaactgcttgtgtggatatattcagacacacattgattgtatgccagaaatattgtattgccagaa |
20277303 |
T |
|
| Q |
138 |
ttattgtggcaactatgttgttttgtttattaattgtgatgtttggtcatcttgtcttttcaaaaacatcagtctttcta-atgatctagagaagtttgg |
236 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||| |
|
|
| T |
20277302 |
ttattgcggcaactatgttgttttgtttattaattgtgatgtttggtcatcttgtcttttcaaaaacttcagtctttctatatgatctagagaagcttgg |
20277203 |
T |
|
| Q |
237 |
ttgatgtatgggattttctattagtattac |
266 |
Q |
| |
|
||||| |||| ||||||| |||||||||| |
|
|
| T |
20277202 |
ttgatctatgagattttcctttagtattac |
20277173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 346 - 459
Target Start/End: Complemental strand, 20448831 - 20448718
Alignment:
| Q |
346 |
tttcttgcataaaacctaacagaactttt-catttttaagataaaggcttcattttccaaatagttcacatcctaagatttacatgaaaagtaaagagat |
444 |
Q |
| |
|
|||| |||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
20448831 |
tttcctgcataaaacctgacagaacttttgcatttctaagataaaggcttcattttccaaatagttcacatcctaagatttacatgaaaagtaaagaca- |
20448733 |
T |
|
| Q |
445 |
tttcaaaagatttaa |
459 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
20448732 |
tttcaaaagttttaa |
20448718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 177 - 285
Target Start/End: Complemental strand, 20448971 - 20448862
Alignment:
| Q |
177 |
tgtttggtcatcttgtcttttcaaaaacatcagtctttcta-atgatctagagaagtttggttgatgtatgggattttctattagtattaccacaatctg |
275 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
20448971 |
tgtttggtcatcgtgtcttttcaaaaacttcagtctttctatatgatctagagaagtttgattgatgtatgagattttctatcagtattaccacaatctg |
20448872 |
T |
|
| Q |
276 |
tgagaaaggg |
285 |
Q |
| |
|
|||| |||| |
|
|
| T |
20448871 |
agagagaggg |
20448862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 21 - 100
Target Start/End: Complemental strand, 20438151 - 20438072
Alignment:
| Q |
21 |
gcccctatgtgtgtgtctgtttattctacgatgaaatcagattgtatgctcgaactgcttgtgtggatatattcagacac |
100 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
20438151 |
gcccctatgtgcgtgtgtgtttattctacgatgaaatcaaattgtatgctcgaactgcttgtgtggatatagtcagacac |
20438072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 20449118 - 20449056
Alignment:
| Q |
21 |
gcccctatgtgtgtgtctgtttattctacgatgaaatcagattgtatgctcgaactgcttgtg |
83 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
20449118 |
gcccctatgagtgtgtctgtttattctacgatgaaatcaaattgtatgctcgaactgcttgtg |
20449056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 20474706 - 20474635
Alignment:
| Q |
30 |
tgtgtgtctgtttattctacgatgaaatcagattgtatgctcgaactgcttgtgtggatatattcagacaca |
101 |
Q |
| |
|
||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
20474706 |
tgtgtgtctgtttattctaagatgaaaccaaattgtatgctcgaactgcttgtgtggatatagtaagacaca |
20474635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 157
Target Start/End: Complemental strand, 20438014 - 20437976
Alignment:
| Q |
119 |
aaatattgtattgccagaattattgtggcaactatgttg |
157 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
20438014 |
aaatattgtattgccagaattattgtggcaattatgttg |
20437976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 119 - 156
Target Start/End: Complemental strand, 20474588 - 20474551
Alignment:
| Q |
119 |
aaatattgtattgccagaattattgtggcaactatgtt |
156 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
20474588 |
aaatattgtattgccagaattattttggcaactatgtt |
20474551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 464
Target Start/End: Complemental strand, 20442011 - 20441972
Alignment:
| Q |
424 |
ttacatgaaaagtaaagagattttcaaaagatttaaggcct |
464 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
20442011 |
ttacatgaaaagtaaagaga-tttcaaaagatttaaggcct |
20441972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 332
Target Start/End: Complemental strand, 20474426 - 20474376
Alignment:
| Q |
282 |
agggagggataaaatcacatcctacatgattatcaataccagaaatcaggg |
332 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||| | ||||||||| |
|
|
| T |
20474426 |
agggagggacaaaatcacatcctaaatgattatcaatattaaaaatcaggg |
20474376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 153
Target Start/End: Complemental strand, 283361 - 283327
Alignment:
| Q |
119 |
aaatattgtattgccagaattattgtggcaactat |
153 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |
|
|
| T |
283361 |
aaatattgtattgccagaattattgttgcaactat |
283327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University