View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19083_low_1 (Length: 883)
Name: NF19083_low_1
Description: NF19083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19083_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 26 - 452
Target Start/End: Original strand, 41652957 - 41653381
Alignment:
| Q |
26 |
caaaccctaacctctctctttctctgcattgatcaagaagtgaagaacaatgtcgagtttcggagccacgaataccaatcctaacaaatcccatgaggtt |
125 |
Q |
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| T |
41652957 |
caaaccctaacctctctctttctctgcattgatcaagaagtgaagaacaatgtcgagtttcggagccacgaataccaatcctaacaaatcccatgaggtt |
41653056 |
T |
|
| Q |
126 |
acttcaccaccttctgattctgtttccagtctttctttcagtcccaaagccaatttcctcattgctacttcttgggacaaccaggtcagtttctcatgtt |
225 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
41653057 |
acttcaccaccttctgattctgtttccagtctttctttcagtcccaaagccaatttcctcattgctacttcttgggacaaccaggtcagtttctcattct |
41653156 |
T |
|
| Q |
226 |
agttgtatcttttctgtttcttgcattcatcattcatcattatttcttcttaacaggttctgtgttgggaggtttcacagaatggaaatactcttagtag |
325 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
41653157 |
agttgtatcttttctgtttcttgcattcatcattcatcattatttcttcttaacaggttctgtgttgggaggtttcaaagaatggaaatactcttagtag |
41653256 |
T |
|
| Q |
326 |
tactcccaaagcttctatttcatatgatcaacctgtaagtacgtgctattaatacatgcatgcatgcttttctataatcacaaagtaattcaaatgtatc |
425 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
41653257 |
tactcccaaagcttctatttctcatgatcaacctgtaagtacgtactattaatgcatgcatgcatgcttttctataatcac-aagtaattc-aatgtatc |
41653354 |
T |
|
| Q |
426 |
tacattgttgttattgttgtacttaat |
452 |
Q |
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| T |
41653355 |
tacattgttgttattgttgtacttaat |
41653381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 485 - 874
Target Start/End: Original strand, 41653385 - 41653779
Alignment:
| Q |
485 |
atgtggcattggttgtaggttttgtgctctgcttggaaggatgatggaacaactgtttttaccggaggttgtgacaagcaggtcaagatgtggccacttt |
584 |
Q |
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| T |
41653385 |
atgtggcattggttgtaggttttgtgctctgcttggaaggatgatggaacaactgtttttaccggaagttgtgacaagcaggtcaagatgtggccacttt |
41653484 |
T |
|
| Q |
585 |
tatctggagggcaaccgacgactgttgccgtgcatgatggtcccgtcaaagagattgcatggataccagagatgaatgttttggccacaggaagctggga |
684 |
Q |
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| T |
41653485 |
tatctggagggcaaccgacgactgttgccgtgcatgatggtcccatcaaagagattgcatggataccagagatgaatgttttggccacaggaagctggga |
41653584 |
T |
|
| Q |
685 |
caaaaccattaagtatgcatattcattctttttatt---------------cgtccaaagagtcttgggtcatttcacaaattattttgtgtttattagg |
769 |
Q |
| |
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||||||||||||| |||||||||||||||||| ||| |||| ||||||| ||||||| ||||||| ||||| ||||| |
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| T |
41653585 |
caaaaccattaagcatgcatattcattcttttcattcagttaccgtacgtacgtctaaagagtattgggtc----------ttattttatgtttgttagg |
41653674 |
T |
|
| Q |
770 |
tattgggatactaggcagcaaaatccagtgcatactcagcaactccctgatctctgctgtacaatggatgtgagacatcctctcatggttgtaggaactg |
869 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41653675 |
tattgggatactaggcagcaaaatccagtgcatactcagcaactccctgatctctgctgtacaatggatgtgagacatcctctcatggttgtaggaactg |
41653774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 8e-48; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 496 - 721
Target Start/End: Complemental strand, 28819847 - 28819622
Alignment:
| Q |
496 |
gttgtaggttttgtgctctgcttggaaggatgatggaacaactgtttttaccggaggttgtgacaagcaggtcaagatgtggccacttttatctggaggg |
595 |
Q |
| |
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|||| ||||||||||||| |||||||| ||||||||||| || || ||| | ||||||||||| ||||||| ||||||||||| ||||| ||||||||| |
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| T |
28819847 |
gttgaaggttttgtgctcagcttggaaagatgatggaacgacagtgttttctggaggttgtgataagcaggctaagatgtggccgcttttgtctggaggg |
28819748 |
T |
|
| Q |
596 |
caaccgacgactgttgccgtgcatgatggtcccgtcaaagagattgcatggataccagagatgaatgttttggccacaggaagctgggacaaaaccatta |
695 |
Q |
| |
|
|||||| ||||||||| ||||||||| |||| | |||||||||||||||||||| ||||||| | |||| ||||| ||||||| ||||||||| | | |
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| T |
28819747 |
caaccggtgactgttgctatgcatgatgctcccattaaagagattgcatggataccggagatgagtcttttagccactggaagcttggacaaaactgtaa |
28819648 |
T |
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| Q |
696 |
agtatgcatattcattctttttattc |
721 |
Q |
| |
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|||||||| || ||||||||||||| |
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| T |
28819647 |
agtatgcaattttattctttttattc |
28819622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 141 - 211
Target Start/End: Complemental strand, 28820172 - 28820102
Alignment:
| Q |
141 |
gattctgtttccagtctttctttcagtcccaaagccaatttcctcattgctacttcttgggacaaccaggt |
211 |
Q |
| |
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|||||| |||||||||||||||||||||| ||||||||||||||| | |||||||| |||||||||||||| |
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| T |
28820172 |
gattctatttccagtctttctttcagtcctaaagccaatttcctcgtcgctacttcctgggacaaccaggt |
28820102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 765 - 869
Target Start/End: Complemental strand, 28818183 - 28818079
Alignment:
| Q |
765 |
ttaggtattgggatactaggcagcaaaatccagtgcatactcagcaactccctgatctctgctgtacaatggatgtgagacatcctctcatggttgtagg |
864 |
Q |
| |
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|||||||||||||||||||||| || |||||||||||||| ||||||||||||| || | ||||||| |||||||||||||| |||||||| || |
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| T |
28818183 |
ttaggtattgggatactaggcaatccaacccagtgcatactcaacaactccctgatcgatgttatacaatgtcagtgagacatcctctgatggttgtggg |
28818084 |
T |
|
| Q |
865 |
aactg |
869 |
Q |
| |
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||||| |
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| T |
28818083 |
aactg |
28818079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 2e-27; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 500 - 687
Target Start/End: Complemental strand, 1464337 - 1464150
Alignment:
| Q |
500 |
taggttttgtgctctgcttggaaggatgatggaacaactgtttttaccggaggttgtgacaagcaggtcaagatgtggccacttttatctggagggcaac |
599 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||| || | || || ||||||||||| || || |||||||| || || |||||||| |||| |
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| T |
1464337 |
taggttttgtgctctgcttggaaggatgatggcacaactgtcttctctggtggatgtgacaagcaagttaaaatgtggcctctgttgtctggaggacaac |
1464238 |
T |
|
| Q |
600 |
cgacgactgttgccgtgcatgatggtcccgtcaaagagattgcatggataccagagatgaatgttttggccacaggaagctgggacaa |
687 |
Q |
| |
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| | ||||| ||| |||| |||| || ||||||| ||||| ||||| || |||||||| |||| |||||||||||||||||||| |
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| T |
1464237 |
caattactgtagccatgcacgatgcacctatcaaagatattgcttggattcccgagatgaaccttttagccacaggaagctgggacaa |
1464150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 765 - 858
Target Start/End: Complemental strand, 1463665 - 1463572
Alignment:
| Q |
765 |
ttaggtattgggatactaggcagcaaaatccagtgcatactcagcaactccctgatctctgctgtacaatggatgtgagacatcctctcatggt |
858 |
Q |
| |
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|||||||||||||||| ||||||| |||||||||||| || || |||||||| || | ||||| | ||||| |||| ||||||||| ||||| |
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| T |
1463665 |
ttaggtattgggatacaaggcagccaaatccagtgcacacacaacaactcccagagcgctgctatgcaatgacagtgaaacatcctctgatggt |
1463572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 1466350 - 1466278
Alignment:
| Q |
139 |
ctgattctgtttccagtctttctttcagtcccaaagccaatttcctcattgctacttcttgggacaaccaggt |
211 |
Q |
| |
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||||||||||||||||||| ||||||||||||| |||| || || |||||||||||||||| || ||||| |
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| T |
1466350 |
ctgattctgtttccagtctcaatttcagtcccaaatccaacttacttgttgctacttcttgggataatcaggt |
1466278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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