View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19083_low_12 (Length: 403)

Name: NF19083_low_12
Description: NF19083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19083_low_12
NF19083_low_12
[»] chr6 (10 HSPs)
chr6 (91-382)||(33414393-33414684)
chr6 (91-373)||(33269365-33269648)
chr6 (91-319)||(33292846-33293074)
chr6 (91-373)||(33383850-33384136)
chr6 (18-133)||(31567426-31567541)
chr6 (148-355)||(33394934-33395143)
chr6 (91-206)||(31565113-31565228)
chr6 (286-385)||(33258215-33258314)
chr6 (289-385)||(31565021-31565117)
chr6 (325-385)||(33280364-33280424)
[»] chr2 (2 HSPs)
chr2 (91-298)||(17445603-17445813)
chr2 (265-351)||(17447896-17447982)
[»] scaffold0428 (2 HSPs)
scaffold0428 (286-385)||(2336-2435)
scaffold0428 (325-385)||(13829-13889)


Alignment Details
Target: chr6 (Bit Score: 172; Significance: 3e-92; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 91 - 382
Target Start/End: Original strand, 33414393 - 33414684
Alignment:
Q  91 tccttaatgaaaggctgctctggaagagaaagctctcctaacctctttatgattcttccctcaacaattttctctcttatgttctcgggtttcgaagcaa 190  Q
    |||||||| |||||||||||| |||||| |||||||||||||||||||  |||||||||||| |||||||||||||| |||||||||||||| |||||||    
T  33414393 tccttaataaaaggctgctctagaagagcaagctctcctaacctctttgagattcttccctcgacaattttctctctaatgttctcgggttttgaagcaa 33414492  T
Q  191 ggtcttctctctgcatctcaagctccttttctttcgtcacaatggttttgggaatatcttcaaaagatacaaactgaaactgtggacaagcaataacttg 290  Q
    |||||||||| ||||||||||| || ||||| ||||||||||| |||| |||||||||||||| |||||||||||||| |||||||||||||  ||||||    
T  33414493 ggtcttctctttgcatctcaagttctttttccttcgtcacaatagtttcgggaatatcttcaatagatacaaactgaacctgtggacaagcagcaacttg 33414592  T
Q  291 cattacaagatcattaaccaactccttgattttatcacttccgccaacaaagtcggtttcacagtcaacttccaatagaacacaaatgcgtg 382  Q
    |||| ||||||||| |||||||||||||| ||| ||||||| |||||||||||| ||||||||||  ||||| | |||||||| ||| ||||    
T  33414593 cattgcaagatcatcaaccaactccttgaatttctcacttctgccaacaaagtccgtttcacagttcacttcaattagaacaccaatacgtg 33414684  T

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Target: chr6; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 91 - 373
Target Start/End: Original strand, 33269365 - 33269648
Alignment:
Q  91 tccttaatgaaaggctgctctggaagagaaagctctcctaacctctttatgattcttccctca-acaattttctctcttatgttctcgggtttcgaagca 189  Q
    |||||||| ||||||| |||| |||||| |||||||||||||||||||  |||| |||||||| |||||||||||||| ||||||||||||||| |||||    
T  33269365 tccttaataaaaggctactctagaagagcaagctctcctaacctctttgagatttttccctcagacaattttctctctaatgttctcgggtttcaaagca 33269464  T
Q  190 aggtcttctctctgcatctcaagctccttttctttcgtcacaatggttttgggaatatcttcaaaagatacaaactgaaactgtggacaagcaataactt 289  Q
    ||||||||||| ||||||||||| || ||||| ||||||||||| |||| |||||||||||||| |||||||||||||| |||||||||||||  |||||    
T  33269465 aggtcttctctttgcatctcaagatctttttccttcgtcacaatagtttcgggaatatcttcaatagatacaaactgaacctgtggacaagcagcaactt 33269564  T
Q  290 gcattacaagatcattaaccaactccttgattttatcacttccgccaacaaagtcggtttcacagtcaacttccaatagaacac 373  Q
    ||||| ||||||||| |||||||| ||||| ||| ||||||| |||||||||||||||||||||||  ||||| | ||||||||    
T  33269565 gcattgcaagatcatcaaccaacttcttgaatttctcacttctgccaacaaagtcggtttcacagttcacttcaattagaacac 33269648  T

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Target: chr6; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 91 - 319
Target Start/End: Original strand, 33292846 - 33293074
Alignment:
Q  91 tccttaatgaaaggctgctctggaagagaaagctctcctaacctctttatgattcttccctcaacaattttctctcttatgttctcgggtttcgaagcaa 190  Q
    |||||||||||||||||||||  |||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  33292846 tccttaatgaaaggctgctctataagagaaagccctcctaacctctttgagattcttccctcaacaattttctctcttatgttctcgggtttcaaagcaa 33292945  T
Q  191 ggtcttctctctgcatctcaagctccttttctttcgtcacaatggttttgggaatatcttcaaaagatacaaactgaaactgtggacaagcaataacttg 290  Q
    |||||||||| ||||||| ||| || ||||| ||||  |||||||||||| |||||||||||| |||||||||||||| |||  ||  ||||  ||||||    
T  33292946 ggtcttctctttgcatcttaagttctttttccttcgcgacaatggttttgagaatatcttcaatagatacaaactgaacctgaagaatagcagcaacttg 33293045  T
Q  291 cattacaagatcattaaccaactccttga 319  Q
    |||| ||||||||||||||||||||||||    
T  33293046 cattgcaagatcattaaccaactccttga 33293074  T

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Target: chr6; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 91 - 373
Target Start/End: Original strand, 33383850 - 33384136
Alignment:
Q  91 tccttaatgaaaggctgctctggaagagaaagctctcctaacctctttatgattcttccctcaacaattttctctcttatgttctcgggtttcgaagcaa 190  Q
    ||||||||||||||||||| |  |||||  || |||  ||||||||||  ||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  33383850 tccttaatgaaaggctgctttataagagcgagatctggtaacctctttgagattcttccctcaacaattttctctgttatgttctcgggtttcaaagcaa 33383949  T
Q  191 ggtcttctctctgcatctcaagctccttttctttcgtcacaatggttttgggaatatcttcaaaagatacaaactgaaactgtggacaagcaa----taa 286  Q
    ||||||||||||||| |||||| || ||||| ||||||||||||||||   |||||||||||| |||||||||||||| || |||||||||||      |    
T  33383950 ggtcttctctctgcaactcaagttctttttccttcgtcacaatggtttcaagaatatcttcaacagatacaaactgaacctctggacaagcaagcagcca 33384049  T
Q  287 cttgcattacaagatcattaaccaactccttgattttatcacttccgccaacaaagtcggtttcacagtcaacttccaatagaacac 373  Q
    |||||||| ||||||||| |||||||||||| ||||| ||||||| ||| ||||||||||||| |||||  ||||| | ||||||||    
T  33384050 cttgcattgcaagatcatcaaccaactccttaattttctcacttctgccgacaaagtcggtttgacagttcacttcaattagaacac 33384136  T

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Target: chr6; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 31567541 - 31567426
Alignment:
Q  18 atagaatcgtgcggaggaaatggggcaatgacacgacttagtcttcatgtatcctcgatacagataaaatgtgtccttaatgaaaggctgctctggaaga 117  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  31567541 atagaatcgtgcggaggaaatggggcaatgacacaacttagtcttcatgtatcctcgatacagataaaatgtgtccttaatgaaaggctgctctagaaga 31567442  T
Q  118 gaaagctctcctaacc 133  Q
    ||||||||||||||||    
T  31567441 gaaagctctcctaacc 31567426  T

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Target: chr6; HSP #6
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 148 - 355
Target Start/End: Original strand, 33394934 - 33395143
Alignment:
Q  148 ccctcaacaattttctctcttatgttctcgggtttcgaagcaaggtcttctctctgcatctcaagctccttttctttcgtcacaatggttttgggaatat 247  Q
    |||||||| |||||||||||||||||| |||||||| |||||||||||||||||| |||||| || || ||||| |||||| |||||||||   |||||     
T  33394934 ccctcaactattttctctcttatgttcccgggtttcaaagcaaggtcttctctctacatctcgagttctttttccttcgtcgcaatggtttcaagaatac 33395033  T
Q  248 cttcaaaagatacaaactgaaactgtggacaagcaataacttgcattacaagatcattaaccaactccttgattttatcacttc--cgccaacaaagtcg 345  Q
    |||||| |||||||||||||| |||||||||||||     |||||||  |||||||  |||||||||||||| | |||||||||   |||||||||||||    
T  33395034 cttcaatagatacaaactgaacctgtggacaagcagcctattgcattgaaagatcagcaaccaactccttgaatctatcacttctgtgccaacaaagtcg 33395133  T
Q  346 gtttcacagt 355  Q
    ||||||||||    
T  33395134 gtttcacagt 33395143  T

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Target: chr6; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 91 - 206
Target Start/End: Complemental strand, 31565228 - 31565113
Alignment:
Q  91 tccttaatgaaaggctgctctggaagagaaagctctcctaacctctttatgattcttccctcaacaattttctctcttatgttctcgggtttcgaagcaa 190  Q
    ||||||||||||||||||||| |||||| |||||||||||| ||||||  ||||||||||||||||||||| |||||| ||||||||| ||| |||||||    
T  31565228 tccttaatgaaaggctgctctagaagagcaagctctcctaatctctttgagattcttccctcaacaattttttctcttctgttctcggcttttgaagcaa 31565129  T
Q  191 ggtcttctctctgcat 206  Q
    ||||||||||||||||    
T  31565128 ggtcttctctctgcat 31565113  T

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Target: chr6; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 286 - 385
Target Start/End: Original strand, 33258215 - 33258314
Alignment:
Q  286 acttgcattacaagatcattaaccaactccttgattttatcacttccgccaacaaagtcggtttcacagtcaacttccaatagaacacaaatgcgtgaat 385  Q
    ||||||||| ||||||| | |||||||||||| | ||| ||||||| |||||||||||||||||||| ||  ||||| | |||||||| |||| ||||||    
T  33258215 acttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaat 33258314  T

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Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 289 - 385
Target Start/End: Complemental strand, 31565117 - 31565021
Alignment:
Q  289 tgcattacaagatcattaaccaactccttgattttatcacttccgccaacaaagtcggtttcacagtcaacttccaatagaacacaaatgcgtgaat 385  Q
    |||||| ||||||||| |||||||||||||| ||| |||||||  || | |||||| |||||||| |  ||||| | |||||||| |||||||||||    
T  31565117 tgcattgcaagatcatgaaccaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgcgtgaat 31565021  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 385
Target Start/End: Original strand, 33280364 - 33280424
Alignment:
Q  325 tcacttccgccaacaaagtcggtttcacagtcaacttccaatagaacacaaatgcgtgaat 385  Q
    ||||||| ||||| |||||| || ||||||| |||||| ||||||| || |||||||||||    
T  33280364 tcacttctgccaaaaaagtcagtatcacagttaacttcaaatagaaaaccaatgcgtgaat 33280424  T

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Target: chr2 (Bit Score: 121; Significance: 7e-62; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 91 - 298
Target Start/End: Complemental strand, 17445813 - 17445603
Alignment:
Q  91 tccttaatgaaaggctgctctggaagagaaagctctcctaacctctttatgattcttccctcaacaattttctctcttatgttctcgggtttcgaagcaa 190  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||  ||| |||||||| ||||||||||||||||| |||||||||||||||| ||    
T  17445813 tccttaatgaaaggctgctctagaagagcaagctctcctaacctctttgagatccttccctcgacaattttctctcttatattctcgggtttcgaagaaa 17445714  T
Q  191 ggtcttctct---ctgcatctcaagctccttttctttcgtcacaatggttttgggaatatcttcaaaagatacaaactgaaactgtggacaagcaataac 287  Q
    ||||||| ||   |||||||||||| || ||||| ||| |||||||||||| |||||||||||||| ||||||||||||||  ||||||||||||  |||    
T  17445713 ggtcttccctctgctgcatctcaagttctttttccttcttcacaatggtttcgggaatatcttcaatagatacaaactgaacatgtggacaagcatcaac 17445614  T
Q  288 ttgcattacaa 298  Q
    |||||||||||    
T  17445613 ttgcattacaa 17445603  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 265 - 351
Target Start/End: Complemental strand, 17447982 - 17447896
Alignment:
Q  265 tgaaactgtggacaagcaataacttgcattacaagatcattaaccaactccttgattttatcacttccgccaacaaagtcggtttca 351  Q
    |||| ||||||| |||||   ||||||||| ||||||||| |||||||||||||| | | || |||| |||||||||||||||||||    
T  17447982 tgaacctgtggaaaagcagccacttgcattgcaagatcatcaaccaactccttgaatctctcccttctgccaacaaagtcggtttca 17447896  T

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Target: scaffold0428 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 286 - 385
Target Start/End: Original strand, 2336 - 2435
Alignment:
Q  286 acttgcattacaagatcattaaccaactccttgattttatcacttccgccaacaaagtcggtttcacagtcaacttccaatagaacacaaatgcgtgaat 385  Q
    ||||||||| ||||||| | |||||||||||| | ||| ||||||| |||||||||||||||||||| ||  ||||| | |||||||| |||| ||||||    
T  2336 acttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaat 2435  T

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Target: scaffold0428; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 385
Target Start/End: Complemental strand, 13889 - 13829
Alignment:
Q  325 tcacttccgccaacaaagtcggtttcacagtcaacttccaatagaacacaaatgcgtgaat 385  Q
    ||||||| ||||| |||||| || ||||||| |||||| ||||||| || |||||||||||    
T  13889 tcacttctgccaaaaaagtcagtatcacagttaacttcaaatagaaaaccaatgcgtgaat 13829  T

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