View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19083_low_13 (Length: 391)

Name: NF19083_low_13
Description: NF19083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19083_low_13
NF19083_low_13
[»] chr6 (7 HSPs)
chr6 (1-376)||(7174791-7175166)
chr6 (94-354)||(8656149-8656409)
chr6 (33-344)||(7120034-7120345)
chr6 (170-354)||(7140310-7140494)
chr6 (33-344)||(7123438-7123749)
chr6 (170-354)||(8679921-8680105)
chr6 (33-344)||(7114962-7115273)
[»] chr2 (2 HSPs)
chr2 (231-292)||(38989511-38989572)
chr2 (315-355)||(43874950-43874990)
[»] chr4 (1 HSPs)
chr4 (249-292)||(52187225-52187268)
[»] chr7 (2 HSPs)
chr7 (208-294)||(32414019-32414105)
chr7 (101-182)||(6849066-6849147)
[»] chr3 (4 HSPs)
chr3 (315-365)||(777926-777976)
chr3 (316-366)||(7033507-7033557)
chr3 (259-297)||(13492331-13492369)
chr3 (317-349)||(4149912-4149944)


Alignment Details
Target: chr6 (Bit Score: 360; Significance: 0; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 7174791 - 7175166
Alignment:
Q  1 ttgttcttgcttccacatagatgcttaaccaaaggaatacccttgtaaacaaaggcgcaaagatttggagtatttaactcgaagttgcaatattctatta 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  7174791 ttgttcttgcttccacatagttgcttaaccaaaggaatacccttgtaaacaaagttgcaaagatttggagtatttaactcgaagttgcaatattctatta 7174890  T
Q  101 ttaaattggcaagtgtgacacttgatatgcagatgttttgtttaccaagaaccttacaatatcgtagggtcaaactattcaacctgttaaataatgtaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7174891 ttaaattggcaagtgtgacacttgatatgcagatgttttgtttaccaagaaccttacaatatcgtagggtcaaactattcaacctgttaaataatgtaaa 7174990  T
Q  201 aggcttgacacggccatcatcgcccgcacgaaaggctaagtaatgtaaagacaagttggttaaagctggaaaattcagagaatttggaaataatgtttct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7174991 aggcttgacacggccatcatcgcccgcacgaaaggctaagtaatgtaaagacaagttggttaaagctggaaaattcagagaatttggaaataatgtttct 7175090  T
Q  301 tgagaatcagaaaaagaaaggttaagagatgttaaagtgtgacatgaaaagaagcttggtggaaagtagttgatat 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  7175091 tgagaatcagaaaaagaaaggttaagagatgttaaagtgtgacatgaaaagaagcttggcggaaagtagttgatat 7175166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 94 - 354
Target Start/End: Original strand, 8656149 - 8656409
Alignment:
Q  94 tctattattaaattggcaagtgtgacacttgatatgcagatgttttgtttaccaagaaccttacaatatcgtagggtcaaactattcaacctgttaaata 193  Q
    |||||| |||||||||  |||||| ||||||||||||||| |||||||||  |||||     ||||| | | ||  |||||||||||||||| ||||||     
T  8656149 tctattgttaaattggtgagtgtggcacttgatatgcagaggttttgtttgtcaagagagcgacaattttgaagaatcaaactattcaacctcttaaatg 8656248  T
Q  194 atgtaaaaggcttgacacggccatcatcgcccgcacgaaaggctaagtaatgtaaagacaagttggttaaagctggaaaattcagagaatttggaaataa 293  Q
     || ||||||||  ||||||||||||||| || ||| |||| | ||| |   |||| | |||| |||||| |||||||| |||| |||||||||||||||    
T  8656249 ctgaaaaaggctcaacacggccatcatcgtccacaccaaagtcaaaggaccctaaaaataagtaggttaatgctggaaatttcaaagaatttggaaataa 8656348  T
Q  294 tgtttcttgagaatcagaaaaagaaaggttaagagatgttaaagtgtgacatgaaaagaag 354  Q
    ||||  ||||| |  || || | ||| || ||||||||||||||||| |||||||||||||    
T  8656349 tgttcgttgaggaaaagcaacacaaatgtgaagagatgttaaagtgtcacatgaaaagaag 8656409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 33 - 344
Target Start/End: Original strand, 7120034 - 7120345
Alignment:
Q  33 aggaatacccttgtaaacaaaggcgcaaagatttggagtatttaactcgaagttgcaatattctattattaaattggcaagtgtgacacttgatatgcag 132  Q
    |||||| ||||||||||||||||  || ||| ||||||| | |||||| |||||||| || ||||||  |||||||  ||||||| |||| ||||||||     
T  7120034 aggaatgcccttgtaaacaaaggtacatagacttggagtgtataactccaagttgcagtagtctattgctaaattgataagtgtggcactcgatatgcac 7120133  T
Q  133 atgttttgtttaccaagaaccttacaatatcgtagggtcaaactattcaacctgttaaataatgtaaaaggcttgacacggccatcatcgcccgcacgaa 232  Q
    | |||| | ||| || |||| ||||||| ||| ||| ||||| | || ||||| ||||||   | ||| ||||  |||   |||||| | ||| ||||||    
T  7120134 aagtttcgattagcatgaacgttacaatctcgaaggatcaaattttttaacctcttaaatgccgaaaagggctcaacattaccatcaccacccacacgaa 7120233  T
Q  233 aggctaagtaatgtaaagacaagttggttaaagctggaaaattcagagaatttggaaataatgtttcttgagaatcagaaaaagaaaggttaagagatgt 332  Q
    || | ||| |   |||||||||  | ||||| ||||||||||||| ||||||||||||||| |||  ||||| |  || || ||||| || |||||||||    
T  7120234 agtcaaaggaccataaagacaaactagttaatgctggaaaattcaaagaatttggaaataaagttctttgaggagaagcaacagaaacgtgaagagatgt 7120333  T
Q  333 taaagtgtgaca 344  Q
    ||||||||||||    
T  7120334 taaagtgtgaca 7120345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 170 - 354
Target Start/End: Original strand, 7140310 - 7140494
Alignment:
Q  170 tcaaactattcaacctgttaaataatgtaaaaggcttgacacggccatcatcgcccgcacgaaaggctaagtaatgtaaagacaagttggttaaagctgg 269  Q
    |||||||||||||||| ||||||  || ||||||||  ||||||||||||||| || ||| |||| | ||| |   |||| | |||| |||||| |||||    
T  7140310 tcaaactattcaacctcttaaatgctgaaaaaggctcaacacggccatcatcgtccacaccaaagtcaaaggaccctaaaaagaagtaggttaatgctgg 7140409  T
Q  270 aaaattcagagaatttggaaataatgtttcttgagaatcagaaaaagaaaggttaagagatgttaaagtgtgacatgaaaagaag 354  Q
    |||||||| ||||||| |||||||||||  ||||  |  || || | ||| || ||||||||||||||||| |||||||||||||    
T  7140410 aaaattcaaagaattttgaaataatgttcgttgacgaaaagcaacacaaatgtgaagagatgttaaagtgtcacatgaaaagaag 7140494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 33 - 344
Target Start/End: Original strand, 7123438 - 7123749
Alignment:
Q  33 aggaatacccttgtaaacaaaggcgcaaagatttggagtatttaactcgaagttgcaatattctattattaaattggcaagtgtgacacttgatatgcag 132  Q
    |||||| ||||||||||||||||  || ||| ||||||| | |||||| |||||||| || ||||||  |||||||  |||| || |||| ||||||||     
T  7123438 aggaatgcccttgtaaacaaaggtacatagacttggagtgtataactccaagttgcagtagtctattgctaaattgataagtttggcactcgatatgcac 7123537  T
Q  133 atgttttgtttaccaagaaccttacaatatcgtagggtcaaactattcaacctgttaaataatgtaaaaggcttgacacggccatcatcgcccgcacgaa 232  Q
    | |||| | |||||| |||| ||||||| ||| ||  ||||| | || ||||| ||||||   | ||| ||||  |||   |||||| |  || ||||||    
T  7123538 aagtttcgattaccatgaacgttacaatctcgaagtatcaaattttttaacctcttaaatgccgaaaagggctcaacattaccatcaccaaccacacgaa 7123637  T
Q  233 aggctaagtaatgtaaagacaagttggttaaagctggaaaattcagagaatttggaaataatgtttcttgagaatcagaaaaagaaaggttaagagatgt 332  Q
    || | ||| |  ||||||||||  | ||||| ||||||||||||| ||||||||||||||| |||  ||||| |  || || ||||| || |||||||||    
T  7123638 agtcaaaggaccgtaaagacaaactagttaatgctggaaaattcaaagaatttggaaataaagttctttgaggagaagcaacagaaacgtgaagagatgt 7123737  T
Q  333 taaagtgtgaca 344  Q
    ||||||||||||    
T  7123738 taaagtgtgaca 7123749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 170 - 354
Target Start/End: Original strand, 8679921 - 8680105
Alignment:
Q  170 tcaaactattcaacctgttaaataatgtaaaaggcttgacacggccatcatcgcccgcacgaaaggctaagtaatgtaaagacaagttggttaaagctgg 269  Q
    |||| ||||||||||| ||||||  || ||||||||  |||||||||| |||| || ||| |||| | ||| |   |||| |||||| ||||||   |||    
T  8679921 tcaagctattcaacctcttaaatgctgaaaaaggctcaacacggccattatcgtccacaccaaagtcaaaggaccctaaaaacaagtaggttaatcatgg 8680020  T
Q  270 aaaattcagagaatttggaaataatgtttcttgagaatcagaaaaagaaaggttaagagatgttaaagtgtgacatgaaaagaag 354  Q
    |||||||| |||||||||||||||||||  ||||| |  || || ||||| || ||| ||||||||||||| |||||||||||||    
T  8680021 aaaattcaaagaatttggaaataatgttcgttgaggaaaagcaacagaaatgtgaagtgatgttaaagtgtcacatgaaaagaag 8680105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 344
Target Start/End: Original strand, 7114962 - 7115273
Alignment:
Q  33 aggaatacccttgtaaacaaaggcgcaaagatttggagtatttaactcgaagttgcaatattctattattaaattggcaagtgtgacacttgatatgcag 132  Q
    |||||| ||||||||||||||||  || ||| ||||||| | |||||| |||||||| || ||||||  |||||||  |||| || |||| ||||||||     
T  7114962 aggaatgcccttgtaaacaaaggtacatagacttggagtgtataactccaagttgcagtagtctattgctaaattgataagtttggcactcgatatgcac 7115061  T
Q  133 atgttttgtttaccaagaaccttacaatatcgtagggtcaaactattcaacctgttaaataatgtaaaaggcttgacacggccatcatcgcccgcacgaa 232  Q
    | |||| | |||||| |||| ||||||| ||| ||  ||||| | || ||||| ||||||   | ||| ||||  |||   |||||| |  || ||||||    
T  7115062 aagtttcgattaccatgaacgttacaatctcgaagtatcaaattttttaacctcttaaatgccgaaaagggctcaacattaccatcaccaaccacacgaa 7115161  T
Q  233 aggctaagtaatgtaaagacaagttggttaaagctggaaaattcagagaatttggaaataatgtttcttgagaatcagaaaaagaaaggttaagagatgt 332  Q
    || | ||| |   |||||||||  | ||||| ||||||||||||| ||||||||||||||| |||  ||||| |  || || ||||| || |||||||||    
T  7115162 agtcaaaggaccataaagacaaactagttaatgctggaaaattcaaagaatttggaaataaagttctttgaggagaagcaacagaaacgtgaagagatgt 7115261  T
Q  333 taaagtgtgaca 344  Q
    ||||||||||||    
T  7115262 taaagtgtgaca 7115273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 231 - 292
Target Start/End: Complemental strand, 38989572 - 38989511
Alignment:
Q  231 aaaggctaagtaatgtaaagacaagttggttaaagctggaaaattcagagaatttggaaata 292  Q
    |||||| ||||| | |||||||||||||||||| | ||| ||||||||||||||| ||||||    
T  38989572 aaaggcaaagtactttaaagacaagttggttaatgatggcaaattcagagaatttcgaaata 38989511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 355
Target Start/End: Original strand, 43874950 - 43874990
Alignment:
Q  315 agaaaggttaagagatgttaaagtgtgacatgaaaagaagc 355  Q
    |||||| |||||||| ||||| |||||||||||||||||||    
T  43874950 agaaagattaagagaagttaatgtgtgacatgaaaagaagc 43874990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 249 - 292
Target Start/End: Complemental strand, 52187268 - 52187225
Alignment:
Q  249 agacaagttggttaaagctggaaaattcagagaatttggaaata 292  Q
    ||||||||||||||| ||||| ||||||||||||||| ||||||    
T  52187268 agacaagttggttaatgctggcaaattcagagaatttcgaaata 52187225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 294
Target Start/End: Complemental strand, 32414105 - 32414019
Alignment:
Q  208 acacggccatcatcgcccgcacgaaaggctaagtaatgtaaagacaagttggttaaagctggaaaattcagagaatttggaaataat 294  Q
    ||||||||||||| |||  | | |||| | ||| ||| |||||||||||||  ||| ||||||| |||||||||||| |||||||||    
T  32414105 acacggccatcattgccgacgcaaaagacgaaggaatataaagacaagttgagtaatgctggaagattcagagaattaggaaataat 32414019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 182
Target Start/End: Complemental strand, 6849147 - 6849066
Alignment:
Q  101 ttaaattggcaagtgtgacacttgatatgcagatgttttgtttaccaagaaccttacaatatcgtagggtcaaactattcaa 182  Q
    ||||||||||||||||  ||||||||||||||| ||||||| ||  ||||||  ||||||| || | | ||||||| |||||    
T  6849147 ttaaattggcaagtgtagcacttgatatgcagaggttttgtctattaagaactctacaataacgaatgatcaaactgttcaa 6849066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 777926 - 777976
Alignment:
Q  315 agaaaggttaagagatgttaaagtgtgacatgaaaagaagcttggtggaaa 365  Q
    |||||| |||||||| |||||||| |||||||||||||||| || ||||||    
T  777926 agaaagattaagagacgttaaagtttgacatgaaaagaagcatgatggaaa 777976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 366
Target Start/End: Complemental strand, 7033557 - 7033507
Alignment:
Q  316 gaaaggttaagagatgttaaagtgtgacatgaaaagaagcttggtggaaag 366  Q
    ||||| |||||||| |||||||||| |||||||||||||| ||| ||||||    
T  7033557 gaaagtttaagagaagttaaagtgttacatgaaaagaagcatggaggaaag 7033507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 297
Target Start/End: Complemental strand, 13492369 - 13492331
Alignment:
Q  259 gttaaagctggaaaattcagagaatttggaaataatgtt 297  Q
    ||||| ||||||||||||| |||||||||||||||||||    
T  13492369 gttaatgctggaaaattcaaagaatttggaaataatgtt 13492331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 349
Target Start/End: Complemental strand, 4149944 - 4149912
Alignment:
Q  317 aaaggttaagagatgttaaagtgtgacatgaaa 349  Q
    ||||| |||||||||||||||||||||||||||    
T  4149944 aaagggtaagagatgttaaagtgtgacatgaaa 4149912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University