View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19083_low_18 (Length: 330)
Name: NF19083_low_18
Description: NF19083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19083_low_18 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 97 - 330
Target Start/End: Original strand, 9950129 - 9950362
Alignment:
| Q |
97 |
caagggtaatcactaatccattttgctacaaatatttgtcccataacattcattattttcacctgtaaaacatagtaatacacaatacctagctagtatc |
196 |
Q |
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|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
9950129 |
caagggtaatcacttagccattttgctacaaatatttgtcccataacattcattattttcacctgtaaaacatagtactacacaatacctagctagtatc |
9950228 |
T |
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| Q |
197 |
aaactcaaaacaatgcatattcaatttcaaacttgtcactcaattaagacacttccattaacatggaacattccaaaacccatcaaccaccgaccacatc |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||| |
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| T |
9950229 |
aaactcaaaacaatgcatattcaatttcaaacttgtcactcaattaagacacttccattaacatggaacattccagaatccattaaccaccgaccacatc |
9950328 |
T |
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| Q |
297 |
gccacctattaccaccaccaaaatccaccgtcac |
330 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
9950329 |
gccacctattaccaccaccaaaatccaccgtcac |
9950362 |
T |
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