View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19083_low_22 (Length: 278)

Name: NF19083_low_22
Description: NF19083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19083_low_22
NF19083_low_22
[»] chr1 (29 HSPs)
chr1 (128-273)||(1389370-1389515)
chr1 (19-131)||(47541848-47541960)
chr1 (19-128)||(24273084-24273192)
chr1 (19-123)||(26500947-26501051)
chr1 (19-126)||(47165077-47165184)
chr1 (68-128)||(946869-946929)
chr1 (68-128)||(15467486-15467546)
chr1 (76-128)||(35499546-35499598)
chr1 (68-128)||(220642-220702)
chr1 (70-130)||(12293020-12293080)
chr1 (73-133)||(41480949-41481009)
chr1 (68-130)||(28632124-28632186)
chr1 (68-128)||(6470228-6470289)
chr1 (25-66)||(24273226-24273267)
chr1 (70-118)||(10166986-10167034)
chr1 (68-128)||(21267346-21267406)
chr1 (70-130)||(37036502-37036562)
chr1 (70-130)||(37446881-37446941)
chr1 (77-128)||(4663808-4663859)
chr1 (70-129)||(23969438-23969497)
chr1 (68-131)||(31166701-31166764)
chr1 (69-128)||(32128574-32128633)
chr1 (68-130)||(37447424-37447486)
chr1 (68-123)||(41822078-41822133)
chr1 (68-126)||(44571680-44571738)
chr1 (25-63)||(47165221-47165259)
chr1 (92-128)||(21088258-21088294)
chr1 (25-65)||(26501086-26501126)
chr1 (70-130)||(37447969-37448029)
[»] chr3 (29 HSPs)
chr3 (19-128)||(8762227-8762336)
chr3 (19-133)||(19475917-19476031)
chr3 (19-131)||(33871761-33871873)
chr3 (20-130)||(47714380-47714488)
chr3 (19-130)||(54761424-54761535)
chr3 (68-124)||(34396148-34396204)
chr3 (68-135)||(7977040-7977107)
chr3 (68-126)||(28181800-28181858)
chr3 (68-128)||(48948071-48948131)
chr3 (68-131)||(21731408-21731471)
chr3 (77-132)||(52527508-52527563)
chr3 (68-130)||(34089065-34089127)
chr3 (68-130)||(38506482-38506544)
chr3 (68-125)||(48824637-48824694)
chr3 (68-128)||(36397511-36397571)
chr3 (68-128)||(53469951-53470011)
chr3 (67-122)||(28092152-28092206)
chr3 (68-131)||(35279467-35279530)
chr3 (68-130)||(671186-671248)
chr3 (68-130)||(43863484-43863546)
chr3 (80-129)||(21307110-21307159)
chr3 (68-128)||(24241711-24241771)
chr3 (79-122)||(645741-645784)
chr3 (68-108)||(19475736-19475776)
chr3 (68-128)||(50168191-50168251)
chr3 (68-131)||(2105219-2105282)
chr3 (32-65)||(8762159-8762192)
chr3 (25-66)||(19475842-19475883)
chr3 (25-73)||(31189395-31189443)
[»] chr2 (32 HSPs)
chr2 (19-135)||(10480220-10480336)
chr2 (21-131)||(11532111-11532221)
chr2 (19-128)||(11793996-11794105)
chr2 (19-131)||(7684545-7684657)
chr2 (68-131)||(769521-769584)
chr2 (68-130)||(1583330-1583392)
chr2 (68-130)||(2925140-2925202)
chr2 (68-130)||(33188787-33188849)
chr2 (68-130)||(39630715-39630777)
chr2 (68-128)||(8736501-8736561)
chr2 (68-128)||(35047201-35047261)
chr2 (68-131)||(3092735-3092798)
chr2 (68-130)||(7309434-7309496)
chr2 (68-134)||(19231011-19231076)
chr2 (68-126)||(21504939-21504997)
chr2 (70-128)||(32839188-32839246)
chr2 (68-125)||(19193746-19193803)
chr2 (68-129)||(44256123-44256184)
chr2 (68-128)||(8735965-8736025)
chr2 (68-128)||(13018234-13018294)
chr2 (80-136)||(17906143-17906199)
chr2 (70-128)||(14306364-14306422)
chr2 (70-132)||(31703919-31703981)
chr2 (68-131)||(11141794-11141857)
chr2 (68-130)||(19072320-19072382)
chr2 (68-130)||(41585192-41585254)
chr2 (25-66)||(11793921-11793962)
chr2 (70-134)||(7611413-7611477)
chr2 (78-128)||(28021706-28021756)
chr2 (73-122)||(6996371-6996420)
chr2 (25-66)||(10480145-10480186)
chr2 (25-65)||(28740622-28740662)
[»] chr6 (15 HSPs)
chr6 (19-130)||(34364845-34364956)
chr6 (19-128)||(13487376-13487485)
chr6 (19-128)||(34244843-34244952)
chr6 (19-128)||(29889296-29889406)
chr6 (68-129)||(8475618-8475679)
chr6 (68-132)||(1195793-1195857)
chr6 (70-130)||(15615918-15615978)
chr6 (68-128)||(1368965-1369025)
chr6 (70-128)||(10105497-10105555)
chr6 (70-130)||(724809-724869)
chr6 (80-132)||(6357821-6357873)
chr6 (25-66)||(13487301-13487342)
chr6 (70-126)||(31413351-31413407)
chr6 (25-65)||(34244987-34245027)
chr6 (26-66)||(34364770-34364810)
[»] chr5 (36 HSPs)
chr5 (19-130)||(12064316-12064427)
chr5 (19-130)||(25935149-25935259)
chr5 (37-128)||(20320529-20320620)
chr5 (19-128)||(37722754-37722863)
chr5 (19-126)||(19533769-19533876)
chr5 (68-130)||(32249647-32249709)
chr5 (19-95)||(37145395-37145470)
chr5 (68-128)||(12480389-12480449)
chr5 (68-128)||(13390962-13391022)
chr5 (70-136)||(15270409-15270475)
chr5 (68-126)||(28489951-28490009)
chr5 (68-130)||(40089410-40089472)
chr5 (68-130)||(41761742-41761804)
chr5 (68-120)||(38178813-38178865)
chr5 (68-120)||(38206037-38206089)
chr5 (68-131)||(927790-927853)
chr5 (70-128)||(6771823-6771881)
chr5 (68-133)||(15579993-15580059)
chr5 (68-130)||(22304732-22304794)
chr5 (68-125)||(22304672-22304729)
chr5 (68-130)||(28490395-28490458)
chr5 (68-128)||(17541884-17541944)
chr5 (80-131)||(32317175-32317225)
chr5 (70-128)||(35111702-35111760)
chr5 (25-66)||(19533910-19533951)
chr5 (70-127)||(37091078-37091135)
chr5 (95-132)||(37145362-37145399)
chr5 (86-126)||(17492691-17492731)
chr5 (70-130)||(33995442-33995502)
chr5 (68-129)||(8255446-8255507)
chr5 (25-66)||(25935293-25935334)
chr5 (68-137)||(33146570-33146639)
chr5 (25-66)||(37145504-37145545)
chr5 (25-66)||(37722897-37722938)
chr5 (25-66)||(40090417-40090458)
chr5 (87-131)||(41789591-41789634)
[»] chr4 (28 HSPs)
chr4 (19-130)||(10633132-10633243)
chr4 (19-130)||(21012437-21012548)
chr4 (19-128)||(31473950-31474059)
chr4 (63-130)||(3803709-3803776)
chr4 (68-125)||(47108708-47108765)
chr4 (68-128)||(40547768-40547828)
chr4 (68-127)||(27284221-27284280)
chr4 (68-131)||(46242619-46242682)
chr4 (70-128)||(30303610-30303668)
chr4 (68-125)||(42776573-42776630)
chr4 (68-128)||(2126326-2126386)
chr4 (68-128)||(19461266-19461326)
chr4 (68-128)||(35470612-35470672)
chr4 (68-128)||(42775780-42775840)
chr4 (70-128)||(21782463-21782521)
chr4 (68-126)||(31948061-31948119)
chr4 (68-130)||(41139960-41140022)
chr4 (79-125)||(5579654-5579700)
chr4 (68-130)||(28751742-28751804)
chr4 (25-66)||(10633058-10633099)
chr4 (25-66)||(31473875-31473916)
chr4 (76-124)||(16299781-16299829)
chr4 (70-130)||(24705820-24705880)
chr4 (70-130)||(54566664-54566724)
chr4 (68-127)||(56118170-56118229)
chr4 (78-128)||(16516666-16516716)
chr4 (25-66)||(1539667-1539708)
chr4 (68-101)||(26534976-26535009)
[»] chr7 (34 HSPs)
chr7 (19-128)||(26161987-26162095)
chr7 (19-135)||(29639056-29639173)
chr7 (19-127)||(31632822-31632928)
chr7 (19-128)||(6498614-6498723)
chr7 (68-130)||(14602769-14602831)
chr7 (68-128)||(14790557-14790617)
chr7 (68-128)||(43791511-43791571)
chr7 (68-130)||(39342158-39342220)
chr7 (68-133)||(35456294-35456359)
chr7 (70-126)||(38320770-38320825)
chr7 (68-130)||(2411801-2411863)
chr7 (68-130)||(40496208-40496270)
chr7 (68-128)||(23548119-23548179)
chr7 (68-128)||(28538677-28538737)
chr7 (68-128)||(36328328-36328388)
chr7 (68-128)||(42817012-42817072)
chr7 (68-131)||(30587427-30587490)
chr7 (70-128)||(37460470-37460528)
chr7 (70-128)||(45181757-45181814)
chr7 (80-128)||(35488714-35488761)
chr7 (68-128)||(45984823-45984883)
chr7 (68-128)||(45989183-45989243)
chr7 (25-66)||(26162129-26162170)
chr7 (25-66)||(31632748-31632789)
chr7 (25-66)||(35776947-35776988)
chr7 (25-65)||(25189219-25189259)
chr7 (68-128)||(32651013-32651073)
chr7 (70-129)||(40495691-40495750)
chr7 (71-128)||(1580381-1580439)
chr7 (25-75)||(15990917-15990967)
chr7 (24-66)||(43791115-43791157)
chr7 (71-128)||(26416413-26416469)
chr7 (25-65)||(6498758-6498798)
chr7 (68-124)||(30080312-30080368)
[»] chr8 (30 HSPs)
chr8 (19-133)||(23011835-23011949)
chr8 (19-130)||(30444804-30444915)
chr8 (19-126)||(36103202-36103308)
chr8 (68-128)||(29611812-29611872)
chr8 (68-128)||(44346221-44346281)
chr8 (68-127)||(31980047-31980106)
chr8 (68-130)||(14727-14789)
chr8 (68-126)||(13145073-13145131)
chr8 (68-130)||(33376827-33376889)
chr8 (68-122)||(40733641-40733695)
chr8 (68-130)||(43185469-43185531)
chr8 (19-84)||(515449-515514)
chr8 (68-128)||(29256913-29256973)
chr8 (68-128)||(35978592-35978652)
chr8 (68-127)||(10593562-10593620)
chr8 (68-127)||(31976666-31976725)
chr8 (68-126)||(26519984-26520042)
chr8 (68-130)||(33986486-33986548)
chr8 (68-128)||(29482341-29482401)
chr8 (25-66)||(23011760-23011801)
chr8 (39-83)||(21465308-21465352)
chr8 (68-132)||(28190227-28190291)
chr8 (77-128)||(9983146-9983197)
chr8 (31-66)||(13144615-13144650)
chr8 (71-130)||(14013267-14013326)
chr8 (68-130)||(1087844-1087906)
chr8 (70-115)||(7079780-7079825)
chr8 (68-137)||(34009178-34009247)
chr8 (37-73)||(8049292-8049328)
chr8 (25-73)||(13404912-13404960)
[»] scaffold0027 (1 HSPs)
scaffold0027 (25-127)||(11276-11378)
[»] scaffold0169 (1 HSPs)
scaffold0169 (68-130)||(4508-4570)
[»] scaffold0417 (1 HSPs)
scaffold0417 (68-125)||(11499-11556)
[»] scaffold0301 (1 HSPs)
scaffold0301 (68-115)||(7641-7688)
[»] scaffold0129 (1 HSPs)
scaffold0129 (68-109)||(19326-19367)
[»] scaffold0318 (1 HSPs)
scaffold0318 (80-128)||(3358-3406)


Alignment Details
Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 128 - 273
Target Start/End: Complemental strand, 1389515 - 1389370
Alignment:
Q  128 taaaggaattattactatcatcagattcaattgttatatgaagtgtagtttgctcnnnnnnnattattaatattatagtagggtttccttagaaacatca 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||    
T  1389515 taaaggaattattactatcatcagattcaattgttatatgaagtgtagtttgctctttttttattattaatattatagtagggtttccttagaaacatca 1389416  T
Q  228 cataaaatttaaaggcttaggatacttgctaactacctttgcttct 273  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||    
T  1389415 cataaaatttaaaggcttaggatgcttgctaactacctttgtttct 1389370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 47541960 - 47541848
Alignment:
Q  19 gtaatgttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatcca 118  Q
    ||||||||||||||||| ||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  47541960 gtaatgttgaggaaatgtaatattacgagggaattcaaatactttgaggtaaattgcctagaattttaaattctttaaaatttctaaattacctcatcca 47541861  T
Q  119 aacacactctaaa 131  Q
    |||||||||||||    
T  47541860 aacacactctaaa 47541848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 24273192 - 24273084
Alignment:
Q  19 gtaatgttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatcca 118  Q
    |||||||| |||||||| ||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||    
T  24273192 gtaatgttaaggaaatgtaatgttacgagggaattcaaatactttgagataa-ttgcgtagaattttaaattctttaaaatttccaaattacctcatcca 24273094  T
Q  119 aacacactct 128  Q
    ||||||||||    
T  24273093 aacacactct 24273084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 26501051 - 26500947
Alignment:
Q  19 gtaatgttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatcca 118  Q
    ||||| |||| |||||| ||| |||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26501051 gtaatattgatgaaatgtaatattatgaaggaattcaaatactttgaggtaaattacctagaattttaaattctttaaaattttcaaattacctcatcca 26500952  T
Q  119 aacac 123  Q
    |||||    
T  26500951 aacac 26500947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 126
Target Start/End: Complemental strand, 47165184 - 47165077
Alignment:
Q  19 gtaatgttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatcca 118  Q
    ||||| || |||||||  |||||||||| ||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  47165184 gtaatattaaggaaatataatgttatgaaggaattcaaatactttgaggtaaattacctaaaattttaaattctttaaaattttcaaattacctcatcca 47165085  T
Q  119 aacacact 126  Q
    ||||||||    
T  47165084 aacacact 47165077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 128
Target Start/End: Original strand, 946869 - 946929
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 128  Q
    |||||||||||||||| |||||||||||||||||   ||||||||||||||||||||||||    
T  946869 taaattgcctagaattctaaattctttaaaatttctcaattacctcatccaaacacactct 946929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 15467546 - 15467486
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 128  Q
    |||||||||||||||| |||||||||||||||||   ||||||||||||||||||||||||    
T  15467546 taaattgcctagaattctaaattctttaaaatttcttaattacctcatccaaacacactct 15467486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 35499546 - 35499598
Alignment:
Q  76 ctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 128  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  35499546 ctagaattctaaattctttaaaattttcaaattacttcatccaaacacactct 35499598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 128
Target Start/End: Original strand, 220642 - 220702
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 128  Q
    |||||||||||||||| |||||||| || ||||||  ||||||||||||||||||||||||    
T  220642 taaattgcctagaattctaaattctctataatttttcaattacctcatccaaacacactct 220702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 12293080 - 12293020
Alignment:
Q  70 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 130  Q
    |||||||||||||| |||||||||| | |||| | ||||||||||||||||||||||||||    
T  12293080 aattgcctagaattctaaattctttgagatttcccaattacctcatccaaacacactctaa 12293020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 73 - 133
Target Start/End: Complemental strand, 41481009 - 41480949
Alignment:
Q  73 tgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaagg 133  Q
    |||||| |||||||||| ||||||||  || ||||||||||||||||||||||||| ||||    
T  41481009 tgcctaaaattttaaatgctttaaaaaatttaaattacctcatccaaacacactcttaagg 41480949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 28632186 - 28632124
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 130  Q
    |||||||||||||||| |||||| |||| |||||   ||||| ||||||||||||||||||||    
T  28632186 taaattgcctagaattctaaattttttataatttctcaattatctcatccaaacacactctaa 28632124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 6470289 - 6470228
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttc-aaattacctcatccaaacacactct 128  Q
    |||||| ||||||||| |||||||||||||| ||||  |||| |||||||||||||||||||    
T  6470289 taaattacctagaattctaaattctttaaaaatttctcaattgcctcatccaaacacactct 6470228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 24273267 - 24273226
Alignment:
Q  25 ttgaggaaatgcaatgttatgagggaattcaaatactttgag 66  Q
    |||||| |||| ||||||||||||||||||||||||||||||    
T  24273267 ttgagggaatgtaatgttatgagggaattcaaatactttgag 24273226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 118
Target Start/End: Original strand, 10166986 - 10167034
Alignment:
Q  70 aattgcctagaattttaaattctttaaaattttcaaattacctcatcca 118  Q
    ||||||||||||||||||||||||||||||||   |||||||| |||||    
T  10166986 aattgcctagaattttaaattctttaaaatttatcaattaccttatcca 10167034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 21267406 - 21267346
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 128  Q
    ||||||||||| ||||  ||||||||||||||||   ||||| ||||||||||||||||||    
T  21267406 taaattgcctataattcgaaattctttaaaatttctcaattatctcatccaaacacactct 21267346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 37036562 - 37036502
Alignment:
Q  70 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 130  Q
    |||| ||||||||| ||||||||| |||||||   ||||||| ||||||||||||||||||    
T  37036562 aattacctagaattctaaattcttcaaaatttcttaattaccccatccaaacacactctaa 37036502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 37446941 - 37446881
Alignment:
Q  70 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 130  Q
    |||| ||||||||| ||||||||| |||||||   ||||||| ||||||||||||||||||    
T  37446941 aattacctagaattataaattcttcaaaatttcttaattaccccatccaaacacactctaa 37446881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 128
Target Start/End: Original strand, 4663808 - 4663859
Alignment:
Q  77 tagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 128  Q
    ||||||||||||||| |||||||||   |||||||||||||||||| |||||    
T  4663808 tagaattttaaattccttaaaatttgtcaattacctcatccaaacaaactct 4663859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 129
Target Start/End: Complemental strand, 23969497 - 23969438
Alignment:
Q  70 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactcta 129  Q
    |||||| || |||||||||||||||||||  ||  ||||||| |||||||||||||||||    
T  23969497 aattgcttataattttaaattctttaaaaaatttcaattaccccatccaaacacactcta 23969438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 131
Target Start/End: Original strand, 31166701 - 31166764
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaa 131  Q
    ||||||| ||||| || ||||||||||| |||||   |||||||| ||||||||||||||||||    
T  31166701 taaattgactagatttctaaattctttacaatttctcaattacctgatccaaacacactctaaa 31166764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 128
Target Start/End: Original strand, 32128574 - 32128633
Alignment:
Q  69 aaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 128  Q
    ||||| |||| ||||||||||||||||||||||   ||||||||| | ||||||||||||    
T  32128574 aaattacctaaaattttaaattctttaaaatttctcaattacctcgttcaaacacactct 32128633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 37447486 - 37447424
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattt-tcaaattacctcatccaaacacactctaa 130  Q
    |||||| ||||||||| ||||||||| ||||||| |||||| || |||||||||||||||||||    
T  37447486 taaattacctagaattctaaattcttcaaaatttctcaaat-acttcatccaaacacactctaa 37447424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 123
Target Start/End: Complemental strand, 41822133 - 41822078
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacac 123  Q
    |||||||||||||||| |||||||| ||||||||   |||||| ||||||||||||    
T  41822133 taaattgcctagaattctaaattctgtaaaatttctcaattacttcatccaaacac 41822078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 44571680 - 44571738
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacact 126  Q
    |||||| ||||| ||| ||||||||||| ||||| | |||||||||||| |||||||||    
T  44571680 taaattacctaggattctaaattctttataatttcccaattacctcatcgaaacacact 44571738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 47165259 - 47165221
Alignment:
Q  25 ttgaggaaatgcaatgttatgagggaattcaaatacttt 63  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  47165259 ttgaggaaatgtaatgttttgagggaattcaaatacttt 47165221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 21088294 - 21088258
Alignment:
Q  92 tttaaaattttcaaattacctcatccaaacacactct 128  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  21088294 tttaaaattttccaattacctcattcaaacacactct 21088258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 26501126 - 26501086
Alignment:
Q  25 ttgaggaaatgcaatgttatgagggaattcaaatactttga 65  Q
    |||||| |||| |||||| ||||||||||||||||||||||    
T  26501126 ttgagggaatgtaatgttttgagggaattcaaatactttga 26501086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 37448029 - 37447969
Alignment:
Q  70 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 130  Q
    |||| ||||||||| ||||||| | |||||||   ||||||| ||||||||||||||||||    
T  37448029 aattccctagaattctaaattcatcaaaatttctcaattaccccatccaaacacactctaa 37447969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 8762227 - 8762336
Alignment:
Q  19 gtaatgttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatcca 118  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8762227 gtaatgttgagaaaatgtaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatcca 8762326  T
Q  119 aacacactct 128  Q
    ||||||||||    
T  8762327 aacacactct 8762336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 19475917 - 19476031
Alignment:
Q  19 gtaatgttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatcca 118  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  19475917 gtaatgttgaggaaatgtaatgttatgagggaattcaaatactttgaggtaaattgcctagaattttaaattctttaaaatttccaaattacctcatcca 19476016  T
Q  119 aacacactctaaagg 133  Q
    |||||||||| ||||    
T  19476017 aacacactcttaagg 19476031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 33871873 - 33871761
Alignment:
Q  19 gtaatgttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatcca 118  Q
    |||||||||||||||   ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  33871873 gtaatgttgaggaaacataatgttacgagggaattcaaatactttgaggtaaattgcctagaattttaaattctttaaaatttccaaattacctcatcca 33871774  T
Q  119 aacacactctaaa 131  Q
     ||||||||||||    
T  33871773 cacacactctaaa 33871761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 20 - 130
Target Start/End: Original strand, 47714380 - 47714488
Alignment:
Q  20 taatgttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaa 119  Q
    |||| ||||||||||| |||||||||| |||||||||||||||  || ||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  47714380 taatattgaggaaatgtaatgttatgaaggaattcaaatactt--aggtaaattgcctagaatttgaaattctttaaaatttccaaattacctcatccaa 47714477  T
Q  120 acacactctaa 130  Q
    |||||||||||    
T  47714478 acacactctaa 47714488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 54761535 - 54761424
Alignment:
Q  19 gtaatgttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatcca 118  Q
    ||||| ||||||||||| |||||||||| |||||||||||||||| |  ||||||| ||| ||||||||||||| |||||||||||||||||||||||||    
T  54761535 gtaatattgaggaaatgtaatgttatgaaggaattcaaatactttaaagtaaattgtctaaaattttaaattctgtaaaattttcaaattacctcatcca 54761436  T
Q  119 aacacactctaa 130  Q
    ||||||||||||    
T  54761435 aacacactctaa 54761424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 68 - 124
Target Start/End: Complemental strand, 34396204 - 34396148
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacaca 124  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  34396204 taaattgcctagaattttaaactctttaaaattttccaattacctcatccaaacaca 34396148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 68 - 135
Target Start/End: Original strand, 7977040 - 7977107
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaaggaa 135  Q
    |||||||||||| |||  |||||||||||||||| | |||||||||||||||||||||||||||||||    
T  7977040 taaattgcctaggattcgaaattctttaaaatttcccaattacctcatccaaacacactctaaaggaa 7977107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 68 - 126
Target Start/End: Complemental strand, 28181858 - 28181800
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacact 126  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||    
T  28181858 taaattgcctagaattctaaattctttaaaattttccaattacctcgtccaaacacact 28181800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 128
Target Start/End: Original strand, 48948071 - 48948131
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 128  Q
    |||||||||||||||| ||||||||||||||||||  |||||||||||||||||| |||||    
T  48948071 taaattgcctagaattctaaattctttaaaatttttcaattacctcatccaaacatactct 48948131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 68 - 131
Target Start/End: Original strand, 21731408 - 21731471
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaa 131  Q
    ||||||||||||||||||||||||| | ||||||   |||||||||||||||||||||||||||    
T  21731408 taaattgcctagaattttaaattctcttaaatttatcaattacctcatccaaacacactctaaa 21731471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 77 - 132
Target Start/End: Original strand, 52527508 - 52527563
Alignment:
Q  77 tagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaag 132  Q
    ||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||    
T  52527508 tagaattctaaattttttaaaattttccaattacctcatccaaacacactctaaag 52527563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 34089065 - 34089127
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 130  Q
    |||||||||||||||| |||||||||||||||||   |||||| |||||||||||||||||||    
T  34089065 taaattgcctagaattctaaattctttaaaatttctcaattacatcatccaaacacactctaa 34089127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 38506544 - 38506482
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 130  Q
    ||||||||||| |||| ||||||||||||||||||| |||||| |||| ||||||||||||||    
T  38506544 taaattgcctaaaattctaaattctttaaaattttccaattacttcattcaaacacactctaa 38506482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 48824694 - 48824637
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacac 125  Q
    ||||||||||| |||| ||||||||||||||||||| |||||||| ||||||||||||    
T  48824694 taaattgcctaaaattctaaattctttaaaattttccaattaccttatccaaacacac 48824637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 36397571 - 36397511
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 128  Q
    ||||||| |||||||| |||||||||||||||||   ||||||||||||||||||||||||    
T  36397571 taaattgtctagaattctaaattctttaaaatttctcaattacctcatccaaacacactct 36397511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 53470011 - 53469951
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 128  Q
    |||||| ||||||||| |||||||||||||||||   ||||||||||||||||||||||||    
T  53470011 taaattacctagaattctaaattctttaaaatttctcaattacctcatccaaacacactct 53469951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 122
Target Start/End: Original strand, 28092152 - 28092206
Alignment:
Q  67 ataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaaca 122  Q
    |||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||    
T  28092152 ataaattgcctagaattt-aaattctttaaaattttccaattagctcatccaaaca 28092206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 131
Target Start/End: Complemental strand, 35279530 - 35279467
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaa 131  Q
    |||||| | ||||||| ||||||||||||||||| | |||| ||||||||||||||||||||||    
T  35279530 taaattacttagaattctaaattctttaaaatttcccaattgcctcatccaaacacactctaaa 35279467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 671248 - 671186
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 130  Q
    ||||||| ||| ||||||| ||||||||||||||   ||||||||||||||||||||||||||    
T  671248 taaattgtctataattttatattctttaaaatttctcaattacctcatccaaacacactctaa 671186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 43863546 - 43863484
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 130  Q
    |||||| ||||||||| |||||||||||||||||   ||||||||| ||||||||||||||||    
T  43863546 taaattacctagaattctaaattctttaaaatttctcaattacctcgtccaaacacactctaa 43863484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 129
Target Start/End: Complemental strand, 21307159 - 21307110
Alignment:
Q  80 aattttaaattctttaaaattttcaaattacctcatccaaacacactcta 129  Q
    |||| ||||||||||||||||| | |||||||||||||||||||||||||    
T  21307159 aattctaaattctttaaaatttcccaattacctcatccaaacacactcta 21307110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 24241771 - 24241711
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 128  Q
    ||||||| |||| ||| |||||||||||||||||   ||||||||||||||||||||||||    
T  24241771 taaattgtctaggattctaaattctttaaaatttctcaattacctcatccaaacacactct 24241711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 122
Target Start/End: Complemental strand, 645784 - 645741
Alignment:
Q  79 gaattttaaattctttaaaattttcaaattacctcatccaaaca 122  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||    
T  645784 gaattctaaattctttaaaattttccaattacctcatccaaaca 645741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 108
Target Start/End: Original strand, 19475736 - 19475776
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaatt 108  Q
    ||||| |||||||||||||||||||||||||||| ||||||    
T  19475736 taaatagcctagaattttaaattctttaaaatttccaaatt 19475776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 50168251 - 50168191
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 128  Q
    ||||||||| |||||| |  ||||||||||||||   ||||||||||||||||||||||||    
T  50168251 taaattgccaagaattctcgattctttaaaatttctcaattacctcatccaaacacactct 50168191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 131
Target Start/End: Original strand, 2105219 - 2105282
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaa 131  Q
    |||||| ||||||||| ||||||||| |||||||   ||||||  |||||||||||||||||||    
T  2105219 taaattacctagaattataaattcttcaaaatttctcaattactccatccaaacacactctaaa 2105282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 65
Target Start/End: Original strand, 8762159 - 8762192
Alignment:
Q  32 aatgcaatgttatgagggaattcaaatactttga 65  Q
    |||| |||||||||||||||||||||||||||||    
T  8762159 aatgtaatgttatgagggaattcaaatactttga 8762192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 19475842 - 19475883
Alignment:
Q  25 ttgaggaaatgcaatgttatgagggaattcaaatactttgag 66  Q
    |||||| |||| |||||||||||| |||||||||||||||||    
T  19475842 ttgagggaatgtaatgttatgaggtaattcaaatactttgag 19475883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 31189443 - 31189395
Alignment:
Q  25 ttgaggaaatgcaatgttatgagggaattcaaatactttgagataaatt 73  Q
    |||||| |||| |||||| |||| |||||||||||||||||| ||||||    
T  31189443 ttgaggtaatgtaatgttttgagagaattcaaatactttgaggtaaatt 31189395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 19 - 135
Target Start/End: Original strand, 10480220 - 10480336
Alignment:
Q  19 gtaatgttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatcca 118  Q
    ||||||||||||||||| |||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10480220 gtaatgttgaggaaatgtaatgctatgagagaattcaaatactttgaggtaaattgcctagaattttaaattctttaaaattttcaaattacctcatcca 10480319  T
Q  119 aacacactctaaaggaa 135  Q
    | |||||||||||||||    
T  10480320 agcacactctaaaggaa 10480336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 21 - 131
Target Start/End: Complemental strand, 11532221 - 11532111
Alignment:
Q  21 aatgttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaa 120  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||| ||||||||||    
T  11532221 aatgttgaggaaatgtaatgttatgagggaattcaaatactttgaggtaaattgcctagaattttaaattctttaaaacttccaaattatctcatccaaa 11532122  T
Q  121 cacactctaaa 131  Q
    |||| ||||||    
T  11532121 cacattctaaa 11532111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 11793996 - 11794105
Alignment:
Q  19 gtaatgttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatcca 118  Q
    ||||||||||| ||||| ||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  11793996 gtaatgttgagaaaatgtaatgttatgagagaattcaaatactttgaggtaaattgtctagaattttaaattctttaaaattttcaaattacctaatcca 11794095  T
Q  119 aacacactct 128  Q
    ||||||||||    
T  11794096 aacacactct 11794105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 7684545 - 7684657
Alignment:
Q  19 gtaatgttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatcca 118  Q
    ||||| ||||||||||| ||||||||||  |||||||||||||||||  ||||| ||||| ||||||||||||||||||||||| ||||||||| |||||    
T  7684545 gtaatattgaggaaatgtaatgttatgaaagaattcaaatactttgaagtaaatggcctaaaattttaaattctttaaaatttttaaattaccttatcca 7684644  T
Q  119 aacacactctaaa 131  Q
    |||||||||||||    
T  7684645 aacacactctaaa 7684657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 68 - 131
Target Start/End: Original strand, 769521 - 769584
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaa 131  Q
    |||||||||||||||| |||||||||||||||||   |||||||||||||||||||||||||||    
T  769521 taaattgcctagaattctaaattctttaaaatttctcaattacctcatccaaacacactctaaa 769584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 1583392 - 1583330
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 130  Q
    |||||||||||||||| |||||||||||||||||   ||||||||||||||||||||||||||    
T  1583392 taaattgcctagaattctaaattctttaaaatttctcaattacctcatccaaacacactctaa 1583330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 2925140 - 2925202
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 130  Q
    |||||||||||||||| ||||||||||||||||| | |||||| |||||||||||||||||||    
T  2925140 taaattgcctagaattctaaattctttaaaatttcccaattacttcatccaaacacactctaa 2925202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 33188849 - 33188787
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 130  Q
    |||||||||||||||| |||||||||||||||||   ||||||||||||||||||||||||||    
T  33188849 taaattgcctagaattctaaattctttaaaatttctcaattacctcatccaaacacactctaa 33188787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 39630715 - 39630777
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 130  Q
    ||||||||||||||||||||||| ||||||||||   ||||||||||||||||||||||||||    
T  39630715 taaattgcctagaattttaaattttttaaaatttctcaattacctcatccaaacacactctaa 39630777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 128
Target Start/End: Original strand, 8736501 - 8736561
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 128  Q
    |||||||  ||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  8736501 taaattgggtagaattttaaattctttaaaattttcaaataacctcatccaaatacactct 8736561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 35047261 - 35047201
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 128  Q
    ||||||||||||||||||||||||||||||||||   ||||||| ||||||||||||||||    
T  35047261 taaattgcctagaattttaaattctttaaaatttctcaattaccccatccaaacacactct 35047201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 68 - 131
Target Start/End: Original strand, 3092735 - 3092798
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaa 131  Q
    |||||| ||||||||| |||||||||||||||||   |||||||||||||||||||||||||||    
T  3092735 taaatttcctagaattctaaattctttaaaatttctcaattacctcatccaaacacactctaaa 3092798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 7309496 - 7309434
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 130  Q
    |||||||| ||||||| |||||||||||||||||   ||||||||||||||||||||||||||    
T  7309496 taaattgcttagaattctaaattctttaaaatttctcaattacctcatccaaacacactctaa 7309434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 134
Target Start/End: Complemental strand, 19231076 - 19231011
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaagga 134  Q
    |||||||||||||||| ||| |||||||||||||   ||||||||||||||||||||||||||||||    
T  19231076 taaattgcctagaattctaa-ttctttaaaatttctcaattacctcatccaaacacactctaaagga 19231011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 21504939 - 21504997
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacact 126  Q
    |||||||| ||||||| ||||||||||||||||| | ||||||||||||||||||||||    
T  21504939 taaattgcttagaattctaaattctttaaaatttcccaattacctcatccaaacacact 21504997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 32839246 - 32839188
Alignment:
Q  70 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 128  Q
    ||||||||||||||||||||||||||||||||   |||||||||||| |||||||||||    
T  32839246 aattgcctagaattttaaattctttaaaatttctcaattacctcatctaaacacactct 32839188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 19193803 - 19193746
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacac 125  Q
    ||||||||||| |||||||| || |||||||||||| |||||||||||||||||||||    
T  19193803 taaattgcctaaaattttaatttttttaaaattttccaattacctcatccaaacacac 19193746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 68 - 129
Target Start/End: Original strand, 44256123 - 44256184
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactcta 129  Q
    |||||||||||||||| |||||||||||||||||   |||||||||||||||||| ||||||    
T  44256123 taaattgcctagaattctaaattctttaaaatttctcaattacctcatccaaacatactcta 44256184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 8736025 - 8735965
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 128  Q
    |||||||| ||| ||| ||||||||||||||||| | ||||||||||||||||||||||||    
T  8736025 taaattgcttaggattctaaattctttaaaatttcccaattacctcatccaaacacactct 8735965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 128
Target Start/End: Original strand, 13018234 - 13018294
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 128  Q
    |||||| ||||||||||||||||||||| |||||   ||||||||||||||||||||||||    
T  13018234 taaattacctagaattttaaattctttataatttctcaattacctcatccaaacacactct 13018294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 17906143 - 17906199
Alignment:
Q  80 aattttaaattctttaaaattttcaaattacctcatccaaacacactctaaaggaat 136  Q
    |||||||||||||||| ||||||  |||||||||||||||||||||||||| |||||    
T  17906143 aattttaaattctttataatttttcaattacctcatccaaacacactctaagggaat 17906199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 14306422 - 14306364
Alignment:
Q  70 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 128  Q
    ||||| |||||||| |||||||||||||||||   ||||||||||||||||||||||||    
T  14306422 aattgtctagaattctaaattctttaaaatttctcaattacctcatccaaacacactct 14306364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 31703981 - 31703919
Alignment:
Q  70 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaag 132  Q
    ||||| |||||||| |||||| | |||||||||| ||||||||||| ||||||||||||||||    
T  31703981 aattgactagaattctaaattatctaaaattttccaattacctcattcaaacacactctaaag 31703919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 131
Target Start/End: Original strand, 11141794 - 11141857
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaa 131  Q
    ||||||| |||| ||| |||||||||||||||||   |||||||||||||||||||||| ||||    
T  11141794 taaattgtctaggattctaaattctttaaaatttctcaattacctcatccaaacacactttaaa 11141857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 19072320 - 19072382
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 130  Q
    |||||| ||||| ||| |||||||||||||||||   ||||| ||||||||||||||||||||    
T  19072320 taaattacctaggattctaaattctttaaaatttctcaattatctcatccaaacacactctaa 19072382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 41585254 - 41585192
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 130  Q
    ||||||| | |||||| |||||||||||||||||   |||||||||||||||| |||||||||    
T  41585254 taaattgtcaagaattctaaattctttaaaatttatcaattacctcatccaaagacactctaa 41585192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 11793921 - 11793962
Alignment:
Q  25 ttgaggaaatgcaatgttatgagggaattcaaatactttgag 66  Q
    |||||| |||| ||||||||||||||||||||||||||||||    
T  11793921 ttgagggaatgtaatgttatgagggaattcaaatactttgag 11793962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 134
Target Start/End: Complemental strand, 7611477 - 7611413
Alignment:
Q  70 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaagga 134  Q
    |||| ||||||||||||||||||| |||||||   ||||||  |||||||||||||| |||||||    
T  7611477 aattacctagaattttaaattcttcaaaatttctcaattactccatccaaacacactttaaagga 7611413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 28021756 - 28021706
Alignment:
Q  78 agaattttaaattctttaaaattttcaaattacctcatccaaacacactct 128  Q
    |||||| |||||||||||||||||   ||||| ||||||||||||||||||    
T  28021756 agaattctaaattctttaaaatttctcaattagctcatccaaacacactct 28021706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 6996420 - 6996371
Alignment:
Q  73 tgcctagaattttaaattctttaaaattttcaaattacctcatccaaaca 122  Q
    ||||||||||| |||||||||  ||| |||| ||||||||||||||||||    
T  6996420 tgcctagaattctaaattcttacaaaatttctaattacctcatccaaaca 6996371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 10480145 - 10480186
Alignment:
Q  25 ttgaggaaatgcaatgttatgagggaattcaaatactttgag 66  Q
    |||||| |||| ||||||| ||||||||||||||||||||||    
T  10480145 ttgagggaatgtaatgttacgagggaattcaaatactttgag 10480186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 28740622 - 28740662
Alignment:
Q  25 ttgaggaaatgcaatgttatgagggaattcaaatactttga 65  Q
    |||||| |||| |||||| ||||||||||||||||||||||    
T  28740622 ttgagggaatgtaatgttttgagggaattcaaatactttga 28740662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 4e-47; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 34364845 - 34364956
Alignment:
Q  19 gtaatgttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatcca 118  Q
    ||||||||||||||||  |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34364845 gtaatgttgaggaaatataatgctatgagggaattcaaatactttgaggtaaattgcctagaattttaaattctttaaaattttcaaattacctcatcca 34364944  T
Q  119 aacacactctaa 130  Q
    ||||||||||||    
T  34364945 aacacactctaa 34364956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 13487376 - 13487485
Alignment:
Q  19 gtaatgttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatcca 118  Q
    ||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  13487376 gtaatgttgaggaaatgtaatattacgagggaattcaaatactttgagataaattgtctagaattttaaattctttaaaatttccaaattacctcatcca 13487475  T
Q  119 aacacactct 128  Q
    ||||||||||    
T  13487476 aacacactct 13487485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 34244952 - 34244843
Alignment:
Q  19 gtaatgttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatcca 118  Q
    ||||| ||||| ||||| ||| |||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  34244952 gtaatattgagtaaatgtaatattatgaaggaatttaaatactttgaggtaaattgcctagaattttaaattctttaaaatttccaaattacctcatcca 34244853  T
Q  119 aacacactct 128  Q
    ||||||||||    
T  34244852 aacacactct 34244843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 29889406 - 29889296
Alignment:
Q  19 gtaatgttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattcttt-aaaattttcaaattacctcatcc 117  Q
    ||||| |||| |||||| |||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  29889406 gtaatattgaagaaatgtaatgttatgaaggaattcaaatactttgaggttaattgcctagaattttaaattctttaaaaaatttcaaattacctcatcc 29889307  T
Q  118 aaacacactct 128  Q
    |||||||||||    
T  29889306 aaacacactct 29889296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 68 - 129
Target Start/End: Original strand, 8475618 - 8475679
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactcta 129  Q
    |||||||||||||||| |||||||||||||||||   |||||||||||| ||||||||||||    
T  8475618 taaattgcctagaattctaaattctttaaaatttctcaattacctcatctaaacacactcta 8475679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 1195793 - 1195857
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaag 132  Q
    ||||||||||||||||| ||||||| ||||||||   ||||||||||| ||||||||||||||||    
T  1195793 taaattgcctagaatttcaaattctctaaaatttctcaattacctcattcaaacacactctaaag 1195857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 15615978 - 15615918
Alignment:
Q  70 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 130  Q
    |||||||||  |||||||||||||||||||||   ||||||||||||||||||||||||||    
T  15615978 aattgcctaatattttaaattctttaaaatttatcaattacctcatccaaacacactctaa 15615918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 68 - 128
Target Start/End: Original strand, 1368965 - 1369025
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 128  Q
    |||||| ||||||||||||||||||||| |||||   ||||||||| ||||||||||||||    
T  1368965 taaattacctagaattttaaattctttataatttctcaattacctcgtccaaacacactct 1369025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 10105497 - 10105555
Alignment:
Q  70 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 128  Q
    ||||||||| || | |||||||||||||||||   ||||||||||||||||||||||||    
T  10105497 aattgcctacaagtctaaattctttaaaatttctcaattacctcatccaaacacactct 10105555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 724869 - 724809
Alignment:
Q  70 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 130  Q
    |||| ||||||||| ||||||||| |||| ||   ||||||||||||||||||||||||||    
T  724869 aattacctagaattctaaattcttaaaaaattctcaattacctcatccaaacacactctaa 724809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 132
Target Start/End: Complemental strand, 6357873 - 6357821
Alignment:
Q  80 aattttaaattctttaaaattttcaaattacctcatccaaacacactctaaag 132  Q
    |||| ||||||||| ||||||| | ||||||||| ||||||||||||||||||    
T  6357873 aattctaaattcttcaaaatttcccaattacctcgtccaaacacactctaaag 6357821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 13487301 - 13487342
Alignment:
Q  25 ttgaggaaatgcaatgttatgagggaattcaaatactttgag 66  Q
    |||||| |||| | ||||||||||||||||||||||||||||    
T  13487301 ttgagggaatgtagtgttatgagggaattcaaatactttgag 13487342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 31413351 - 31413407
Alignment:
Q  70 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacact 126  Q
    |||| ||||||||| ||||||||| |||||||   ||||||| ||||||||||||||    
T  31413351 aattccctagaattctaaattcttcaaaatttctcaattaccccatccaaacacact 31413407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 34245027 - 34244987
Alignment:
Q  25 ttgaggaaatgcaatgttatgagggaattcaaatactttga 65  Q
    |||||| |||| |||||| ||||||||||||||||||||||    
T  34245027 ttgagggaatgtaatgttttgagggaattcaaatactttga 34244987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 34364770 - 34364810
Alignment:
Q  26 tgaggaaatgcaatgttatgagggaattcaaatactttgag 66  Q
    ||||| |||| ||||||||||||||||| ||||||||||||    
T  34364770 tgagggaatgtaatgttatgagggaatttaaatactttgag 34364810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 4e-47; HSPs: 36)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 12064427 - 12064316
Alignment:
Q  19 gtaatgttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatcca 118  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  12064427 gtaatgttgaggaaatgtaatgttatgtgggaattcaaatactttgaggtaaattgcctagaattttaaattctttaaaatttccaaattacctcatcca 12064328  T
Q  119 aacacactctaa 130  Q
    ||||||||||||    
T  12064327 aacacactctaa 12064316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 25935259 - 25935149
Alignment:
Q  19 gtaatgttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatcca 118  Q
    |||||||| | |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||    
T  25935259 gtaatgttaatgaaatgtaatgttatgagggaattcaaatactttgagataa-ttgcctagaattttaaattctttaaaatttctaaattacctcatcca 25935161  T
Q  119 aacacactctaa 130  Q
    ||||||||||||    
T  25935160 aacacactctaa 25935149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 37 - 128
Target Start/End: Complemental strand, 20320620 - 20320529
Alignment:
Q  37 aatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 128  Q
    ||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20320620 aatgtaatgaaggaattcaaatactttgaggtaaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 20320529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 37722863 - 37722754
Alignment:
Q  19 gtaatgttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatcca 118  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||   |||||    
T  37722863 gtaatgttgaggaaatgtagtgttatgagggaattcaaatactttgaggtaaattacctagaattttaaattctttaaaatttccaaattactcaatcca 37722764  T
Q  119 aacacactct 128  Q
    ||||||||||    
T  37722763 aacacactct 37722754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 126
Target Start/End: Complemental strand, 19533876 - 19533769
Alignment:
Q  19 gtaatgttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatcca 118  Q
    ||||| ||||||||||| ||| ||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||    
T  19533876 gtaatcttgaggaaatgtaatattacgagggaattcaaatattttgaggtaaattgcctagaattttaaattctttaaaatttccaaattacctcattca 19533777  T
Q  119 aacacact 126  Q
    ||||||||    
T  19533776 aacacact 19533769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 32249709 - 32249647
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 130  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  32249709 taaattgcctagaattctaaattctttaaaattttcaaattacctcatccaaacacactctaa 32249647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 37145470 - 37145395
Alignment:
Q  19 gtaatgttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattcttta 95  Q
    |||||||| || ||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  37145470 gtaatgttaagaaaatgtaatgctatgagggaattcaaatactttgagat-aattgcctagaattttaaattcttta 37145395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 68 - 128
Target Start/End: Original strand, 12480389 - 12480449
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 128  Q
    |||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  12480389 taaattgcttagaattctaaattctttaaaattttccaattacctcatccaaacacactct 12480449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 13391022 - 13390962
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 128  Q
    |||||||| ||||||| ||||||||||||||||| | ||||||||||||||||||||||||    
T  13391022 taaattgcttagaattctaaattctttaaaatttcccaattacctcatccaaacacactct 13390962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 136
Target Start/End: Complemental strand, 15270475 - 15270409
Alignment:
Q  70 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaaggaat 136  Q
    |||| ||||||||| ||||||||||||||||||| ||||||||||| |||||||| ||||| |||||    
T  15270475 aattacctagaattctaaattctttaaaattttccaattacctcattcaaacacattctaagggaat 15270409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 28489951 - 28490009
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacact 126  Q
    |||||||||||| ||| ||||||| ||||||||||| ||||||||||||||||||||||    
T  28489951 taaattgcctaggattctaaattccttaaaattttctaattacctcatccaaacacact 28490009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 40089472 - 40089410
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 130  Q
    |||||||||||| | | ||||||||||||||||| | ||||||||||||||||||||||||||    
T  40089472 taaattgcctaggaatctaaattctttaaaatttcctaattacctcatccaaacacactctaa 40089410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 41761804 - 41761742
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 130  Q
    ||||||||||| |||| |||||||||||||||||   ||||||||||||||||||||||||||    
T  41761804 taaattgcctaaaattctaaattctttaaaatttctcaattacctcatccaaacacactctaa 41761742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 38178865 - 38178813
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaa 120  Q
    ||||||||||| |||| ||||||||||||||||||| ||||||||||||||||    
T  38178865 taaattgcctataattctaaattctttaaaattttccaattacctcatccaaa 38178813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 38206089 - 38206037
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaa 120  Q
    ||||||||||| |||| ||||||||||||||||||| ||||||||||||||||    
T  38206089 taaattgcctataattctaaattctttaaaattttccaattacctcatccaaa 38206037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 131
Target Start/End: Original strand, 927790 - 927853
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaa 131  Q
    ||||||| |||||||| |||||||||||||||||   ||||||||||| |||||||||||||||    
T  927790 taaattgtctagaattctaaattctttaaaatttctcaattacctcattcaaacacactctaaa 927853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 6771881 - 6771823
Alignment:
Q  70 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 128  Q
    |||||| ||||||| ||||||||||||||||| | ||||| ||||||||||||||||||    
T  6771881 aattgcatagaattctaaattctttaaaatttcccaattaactcatccaaacacactct 6771823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 133
Target Start/End: Complemental strand, 15580059 - 15579993
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaatta-cctcatccaaacacactctaaagg 133  Q
    ||||||| ||||||||||||||| |||||||||| | ||||| ||||||||||||||||||| ||||    
T  15580059 taaattgtctagaattttaaattttttaaaatttcctaattaccctcatccaaacacactcttaagg 15579993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 22304794 - 22304732
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 130  Q
    |||||||||||| ||| ||||||||||||||||| | |||||||||||| ||| |||||||||    
T  22304794 taaattgcctaggattctaaattctttaaaatttcccaattacctcatcaaaatacactctaa 22304732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 125
Target Start/End: Original strand, 22304672 - 22304729
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacac 125  Q
    ||||||| |||||||| |||||||||||||||||   |||||||||||||||||||||    
T  22304672 taaattgtctagaattctaaattctttaaaatttctcaattacctcatccaaacacac 22304729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 28490395 - 28490458
Alignment:
Q  68 taaattgcctagaattttaaattcttt--aaaattttcaaattacctcatccaaacacactctaa 130  Q
    |||||||||| ||||||||||||||||  |||| |||| ||||||||||||||||||||||||||    
T  28490395 taaattgccttgaattttaaattctttaaaaaaatttc-aattacctcatccaaacacactctaa 28490458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 17541944 - 17541884
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 128  Q
    ||||||| |||| ||| |||||||||||||||||   ||||||||||||||||||||||||    
T  17541944 taaattgtctaggattctaaattctttaaaatttctcaattacctcatccaaacacactct 17541884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 131
Target Start/End: Original strand, 32317175 - 32317225
Alignment:
Q  80 aattttaaattctttaaaattttcaaattacctcatccaaacacactctaaa 131  Q
    |||||||||||||||||||||||| |||||||| |||||||||| |||||||    
T  32317175 aattttaaattctttaaaattttc-aattacctaatccaaacactctctaaa 32317225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 35111702 - 35111760
Alignment:
Q  70 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 128  Q
    |||| ||||||||| |||||||||||||||||   ||||||| ||||||||||||||||    
T  35111702 aattccctagaattctaaattctttaaaatttctcaattaccccatccaaacacactct 35111760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 19533951 - 19533910
Alignment:
Q  25 ttgaggaaatgcaatgttatgagggaattcaaatactttgag 66  Q
    |||||| |||| ||||||||||||||||||||||||||||||    
T  19533951 ttgagggaatgtaatgttatgagggaattcaaatactttgag 19533910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 127
Target Start/End: Original strand, 37091078 - 37091135
Alignment:
Q  70 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactc 127  Q
    |||| |||||| || |||||||||||| |||| | |||||||||||||||||||||||    
T  37091078 aattacctagagttctaaattctttaagatttaccaattacctcatccaaacacactc 37091135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 132
Target Start/End: Original strand, 37145362 - 37145399
Alignment:
Q  95 aaaattttcaaattacctcatccaaacacactctaaag 132  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  37145362 aaaatttccaaattacctcatccaaacacactctaaag 37145399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 17492731 - 17492691
Alignment:
Q  86 aaattctttaaaattttcaaattacctcatccaaacacact 126  Q
    ||||| |||||||||||| ||||||||||||||||||||||    
T  17492731 aaattttttaaaattttctaattacctcatccaaacacact 17492691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 33995502 - 33995442
Alignment:
Q  70 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 130  Q
    ||||||||| |||| ||| |||||||||||||   |||||| |||||||||||||||||||    
T  33995502 aattgcctaaaattctaatttctttaaaatttgtcaattacatcatccaaacacactctaa 33995442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 129
Target Start/End: Original strand, 8255446 - 8255507
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactcta 129  Q
    ||||||||||| |||| ||||||||| |||||||   ||||| |||||||||||| ||||||    
T  8255446 taaattgcctaaaattataaattcttcaaaatttctcaattatctcatccaaacatactcta 8255507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 25935334 - 25935293
Alignment:
Q  25 ttgaggaaatgcaatgttatgagggaattcaaatactttgag 66  Q
    |||||| |||| |||||||||||| |||||||||||||||||    
T  25935334 ttgagggaatgtaatgttatgaggaaattcaaatactttgag 25935293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 137
Target Start/End: Original strand, 33146570 - 33146639
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaaggaatt 137  Q
    |||||||||||  ||| |||||||||| ||||||   || ||||||||||||||||||||| ||| ||||    
T  33146570 taaattgcctaagattctaaattctttgaaatttctcaactacctcatccaaacacactcttaagaaatt 33146639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 37145545 - 37145504
Alignment:
Q  25 ttgaggaaatgcaatgttatgagggaattcaaatactttgag 66  Q
    |||||| |||| ||||||||||| ||||||||||||||||||    
T  37145545 ttgagggaatgtaatgttatgagagaattcaaatactttgag 37145504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 37722938 - 37722897
Alignment:
Q  25 ttgaggaaatgcaatgttatgagggaattcaaatactttgag 66  Q
    |||||| |||| |||||| |||||||||||||||||||||||    
T  37722938 ttgagggaatgtaatgttttgagggaattcaaatactttgag 37722897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 40090458 - 40090417
Alignment:
Q  25 ttgaggaaatgcaatgttatgagggaattcaaatactttgag 66  Q
    ||||||||||| |||||| ||| |||||||||||||||||||    
T  40090458 ttgaggaaatgtaatgttttgatggaattcaaatactttgag 40090417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 131
Target Start/End: Original strand, 41789591 - 41789634
Alignment:
Q  87 aattctttaaaattttcaaattacctcatccaaacacactctaaa 131  Q
    ||||||||||||||||||  ||||||| |||||||||||||||||    
T  41789591 aattctttaaaattttcat-ttacctcgtccaaacacactctaaa 41789634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 4e-47; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 10633132 - 10633243
Alignment:
Q  19 gtaatgttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatcca 118  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10633132 gtaatgttgaggaaatgtaatattatgagggaattcaaatactttgaggtaaattgcctagaattttaaattctttaaaatttccaaattacctcatcca 10633231  T
Q  119 aacacactctaa 130  Q
    ||||||||||||    
T  10633232 aacacactctaa 10633243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 21012548 - 21012437
Alignment:
Q  19 gtaatgttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatcca 118  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  21012548 gtaatgttgaggaaatgtaatgttatgagggaattcaaatattttgaggtaaattgtctagaattttaaattctttaaaatttttaaattacctcatcca 21012449  T
Q  119 aacacactctaa 130  Q
    ||||||||||||    
T  21012448 aacacactctaa 21012437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 31473950 - 31474059
Alignment:
Q  19 gtaatgttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatcca 118  Q
    ||||||||||||||||| |||||||||| |||||||||||| |||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  31473950 gtaatgttgaggaaatgtaatgttatgacggaattcaaataatttgaggtaaattgtctagaattttaaattctttaaaatttccaaattacctcatcca 31474049  T
Q  119 aacacactct 128  Q
    ||||||||||    
T  31474050 aacacactct 31474059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 63 - 130
Target Start/End: Original strand, 3803709 - 3803776
Alignment:
Q  63 tgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 130  Q
    |||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3803709 tgaggtaagttgcctaaaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 3803776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 68 - 125
Target Start/End: Original strand, 47108708 - 47108765
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacac 125  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  47108708 taaattgcctagaattctaaattctttaaaattttccaattacctcatccaaacacac 47108765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 40547828 - 40547768
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 128  Q
    ||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  40547828 taaattgcctagaattttaaattctttaaaatttctcaattacctcatccaaacacactct 40547768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 68 - 127
Target Start/End: Complemental strand, 27284280 - 27284221
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactc 127  Q
    |||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||    
T  27284280 taaattgcctagaattctaaattctttaaaattttcaaattatatcatccaaacacactc 27284221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 68 - 131
Target Start/End: Complemental strand, 46242682 - 46242619
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaa 131  Q
    |||||||| ||||||| ||||||||||||||||| | |||||||||||||||||||||||||||    
T  46242682 taaattgcttagaattataaattctttaaaatttcccaattacctcatccaaacacactctaaa 46242619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 30303610 - 30303668
Alignment:
Q  70 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 128  Q
    ||||||||||||||||||||||||||||||||   ||||| ||||||||||||||||||    
T  30303610 aattgcctagaattttaaattctttaaaatttctcaattatctcatccaaacacactct 30303668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 68 - 125
Target Start/End: Original strand, 42776573 - 42776630
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacac 125  Q
    |||||||| ||| ||| ||||||||||||||||||| |||||||||||||||||||||    
T  42776573 taaattgcttaggattctaaattctttaaaattttccaattacctcatccaaacacac 42776630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 128
Target Start/End: Original strand, 2126326 - 2126386
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 128  Q
    |||||||||||||||| |||||||||||||||||   ||||||| ||||||||||||||||    
T  2126326 taaattgcctagaattctaaattctttaaaatttctcaattaccccatccaaacacactct 2126386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 19461326 - 19461266
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 128  Q
    ||||||||||| |||||||||||||||||||  ||| ||||||||||| ||||||||||||    
T  19461326 taaattgcctaaaattttaaattctttaaaaaattctaattacctcattcaaacacactct 19461266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 128
Target Start/End: Original strand, 35470612 - 35470672
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 128  Q
    |||||||||||||||| |||||||||||||||||   |||||| |||||||||||||||||    
T  35470612 taaattgcctagaattctaaattctttaaaatttctcaattacatcatccaaacacactct 35470672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 42775840 - 42775780
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 128  Q
    |||||| ||||||||| |||||||||||||||||   ||||||||||||||||||||||||    
T  42775840 taaatttcctagaattctaaattctttaaaatttctcaattacctcatccaaacacactct 42775780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 21782463 - 21782521
Alignment:
Q  70 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 128  Q
    ||||| |||||||| |||||||||||||||||   ||||||||||||||||||||||||    
T  21782463 aattgtctagaattctaaattctttaaaatttcacaattacctcatccaaacacactct 21782521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 31948061 - 31948119
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacact 126  Q
    ||||||||||| ||||||||||||||||||| |||| ||||||||| ||||||| ||||    
T  31948061 taaattgcctaaaattttaaattctttaaaagtttccaattacctcgtccaaacgcact 31948119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 41139960 - 41140022
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 130  Q
    |||||||| |||||||||||||||||||||||||   |||||| || ||||||||||||||||    
T  41139960 taaattgcttagaattttaaattctttaaaatttctcaattacttcttccaaacacactctaa 41140022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 125
Target Start/End: Complemental strand, 5579700 - 5579654
Alignment:
Q  79 gaattttaaattctttaaaattttcaaattacctcatccaaacacac 125  Q
    ||||||||||||||| ||||||||| ||||||||||| |||||||||    
T  5579700 gaattttaaattcttcaaaattttctaattacctcattcaaacacac 5579654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 28751804 - 28751742
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 130  Q
    ||||||||||| |||| |||||| ||||||||||   ||||| ||||||||||||||||||||    
T  28751804 taaattgcctataattctaaattttttaaaatttctcaattatctcatccaaacacactctaa 28751742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 10633058 - 10633099
Alignment:
Q  25 ttgaggaaatgcaatgttatgagggaattcaaatactttgag 66  Q
    |||||| |||| ||||||||||||||||||||||||||||||    
T  10633058 ttgagggaatgtaatgttatgagggaattcaaatactttgag 10633099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 31473875 - 31473916
Alignment:
Q  25 ttgaggaaatgcaatgttatgagggaattcaaatactttgag 66  Q
    |||||| |||| ||||||||||||||||||||||||||||||    
T  31473875 ttgagggaatgtaatgttatgagggaattcaaatactttgag 31473916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 16299829 - 16299781
Alignment:
Q  76 ctagaattttaaattctttaaaattttcaaattacctcatccaaacaca 124  Q
    ||||||||||||||||| ||| |||||| ||||||||||| ||||||||    
T  16299829 ctagaattttaaattctctaatattttccaattacctcattcaaacaca 16299781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 130
Target Start/End: Original strand, 24705820 - 24705880
Alignment:
Q  70 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 130  Q
    |||| |||| |||| ||||||||| ||||||||  ||||||| ||||||||||||||||||    
T  24705820 aattccctaaaattctaaattcttcaaaatttttcaattaccccatccaaacacactctaa 24705880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 130
Target Start/End: Original strand, 54566664 - 54566724
Alignment:
Q  70 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 130  Q
    |||| ||| ||||||||||||| |||||||||   ||||||| ||||||||||||||||||    
T  54566664 aattcccttgaattttaaattcattaaaatttctcaattaccccatccaaacacactctaa 54566724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 127
Target Start/End: Complemental strand, 56118229 - 56118170
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactc 127  Q
    |||||||||||||||| | | |||| ||||||||   |||||||||||||||||||||||    
T  56118229 taaattgcctagaattctgagttctctaaaatttgtcaattacctcatccaaacacactc 56118170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 16516666 - 16516716
Alignment:
Q  78 agaattttaaattctttaaaattttcaaattacctcatccaaacacactct 128  Q
    |||||| ||||||||| |||||||   ||||||||||||||||||||||||    
T  16516666 agaattctaaattcttcaaaatttctcaattacctcatccaaacacactct 16516716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 1539667 - 1539708
Alignment:
Q  25 ttgaggaaatgcaatgttatgagggaattcaaatactttgag 66  Q
    |||||| |||| |||||| |||||||||||||||||||||||    
T  1539667 ttgagggaatgtaatgttttgagggaattcaaatactttgag 1539708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 101
Target Start/End: Original strand, 26534976 - 26535009
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattt 101  Q
    |||||||||||||||| |||||||||||||||||    
T  26534976 taaattgcctagaattctaaattctttaaaattt 26535009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 26162095 - 26161987
Alignment:
Q  19 gtaatgttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatcca 118  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  26162095 gtaatgttaaggaaatgtaatgttatgagggaattcaaatactttgagataa-ttgcctagaattttaaattctttaaaatttccaaattacctcatcca 26161997  T
Q  119 aacacactct 128  Q
    ||||||||||    
T  26161996 aacacactct 26161987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 135
Target Start/End: Complemental strand, 29639173 - 29639056
Alignment:
Q  19 gtaatgttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattt-taaattctttaaaattttcaaattacctcatcc 117  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  29639173 gtaatgttgaggaaatgtaatgttatgagagaattcaaatactttgaggtaaattgcctagaatttaaaaattctttaaaattttcaaattacctcatcc 29639074  T
Q  118 aaacacactctaaaggaa 135  Q
    ||||||||||||| ||||    
T  29639073 aaacacactctaagggaa 29639056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 19 - 127
Target Start/End: Original strand, 31632822 - 31632928
Alignment:
Q  19 gtaatgttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatcca 118  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||  ||||||||||||||||| |||||    
T  31632822 gtaatgttgaggaaatgtaatgttatgagggaattcaaatactttgaggtaaattgtctagaattttaaattctt--aaattttcaaattaccttatcca 31632919  T
Q  119 aacacactc 127  Q
    |||||||||    
T  31632920 aacacactc 31632928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 6498723 - 6498614
Alignment:
Q  19 gtaatgttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatcca 118  Q
    ||||| ||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||   |||||||||| ||||||||||||||||    
T  6498723 gtaatattgaggaaatgtaatgttatgaaggaattcaaatactttgaggtaaattgcctagaattttaaagaatttaaaatttccaaattacctcatcca 6498624  T
Q  119 aacacactct 128  Q
    ||||||||||    
T  6498623 aacacactct 6498614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 14602831 - 14602769
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 130  Q
    |||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||    
T  14602831 taaattgcctagaattctaaattctttaaaatttttcaattacctcatccaaacacactctaa 14602769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 68 - 128
Target Start/End: Original strand, 14790557 - 14790617
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 128  Q
    |||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  14790557 taaattgcctaggattctaaattctttaaaattttccaattacctcatccaaacacactct 14790617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 68 - 128
Target Start/End: Original strand, 43791511 - 43791571
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 128  Q
    ||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  43791511 taaattgccaagaattctaaattctttaaaattttccaattacctcatccaaacacactct 43791571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 39342220 - 39342158
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 130  Q
    |||||||||||||||| |||||||||||||||||   ||||||||||||||||||||||||||    
T  39342220 taaattgcctagaattctaaattctttaaaatttctcaattacctcatccaaacacactctaa 39342158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 68 - 133
Target Start/End: Original strand, 35456294 - 35456359
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaagg 133  Q
    |||||||||||||||| |||||||||||||| |||  |||||||||||||||||||||||| ||||    
T  35456294 taaattgcctagaattctaaattctttaaaaattttcaattacctcatccaaacacactcttaagg 35456359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 38320770 - 38320825
Alignment:
Q  70 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacact 126  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  38320770 aattgcctagaattttaaattctttaaaattttc-aattaccacatccaaacacact 38320825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 2411801 - 2411863
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 130  Q
    |||||||||||||||| |||||||||||||||||   ||||||||||||||||||| ||||||    
T  2411801 taaattgcctagaattctaaattctttaaaatttctcaattacctcatccaaacactctctaa 2411863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 40496208 - 40496270
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 130  Q
    |||||||||||||||| |||||||||||||||||   |||||||||||||||||| |||||||    
T  40496208 taaattgcctagaattataaattctttaaaatttcttaattacctcatccaaacatactctaa 40496270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 23548179 - 23548119
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 128  Q
    |||||| ||||||||| |||||||||||||||||   ||||||||||||||||||||||||    
T  23548179 taaatttcctagaattctaaattctttaaaatttctcaattacctcatccaaacacactct 23548119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 28538737 - 28538677
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 128  Q
    ||||||||||| |||| |||||||||||||||||   ||||||||||||||||||||||||    
T  28538737 taaattgcctaaaattctaaattctttaaaatttctcaattacctcatccaaacacactct 28538677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 36328388 - 36328328
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 128  Q
    |||||||||||||||| |||||| ||||||||||   ||||||||||||||||||||||||    
T  36328388 taaattgcctagaattctaaattttttaaaatttctcaattacctcatccaaacacactct 36328328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 128
Target Start/End: Original strand, 42817012 - 42817072
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 128  Q
    |||||||||||||||| |||||||||||||||||   ||||||||||||| ||||||||||    
T  42817012 taaattgcctagaattctaaattctttaaaatttctcaattacctcatcctaacacactct 42817072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 131
Target Start/End: Complemental strand, 30587490 - 30587427
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaa 131  Q
    |||||||||||||||| |||||||| |||||||||| ||||||||| |||||||| ||| ||||    
T  30587490 taaattgcctagaattctaaattctctaaaattttccaattacctcgtccaaacatactataaa 30587427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 37460528 - 37460470
Alignment:
Q  70 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 128  Q
    ||||| ||||||||||||||||||||||| |||  |||||||||||||||| |||||||    
T  37460528 aattgtctagaattttaaattctttaaaaattttcaattacctcatccaaatacactct 37460470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 45181814 - 45181757
Alignment:
Q  70 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 128  Q
    |||||||||||||| |||| ||| |||||||||||| ||||||||||||||||||||||    
T  45181814 aattgcctagaattctaaactctctaaaattttcaa-ttacctcatccaaacacactct 45181757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 35488714 - 35488761
Alignment:
Q  80 aattttaaattctttaaaattttcaaattacctcatccaaacacactct 128  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||    
T  35488714 aattttaaattctttaaaattttc-aattacatcatccaaacacactct 35488761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 68 - 128
Target Start/End: Original strand, 45984823 - 45984883
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 128  Q
    |||||||||||||||| |||||||||||||||||    |||||| ||||||||||||||||    
T  45984823 taaattgcctagaattctaaattctttaaaatttctctattaccccatccaaacacactct 45984883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 68 - 128
Target Start/End: Original strand, 45989183 - 45989243
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 128  Q
    |||||||||||||||| |||||||||||||||||    |||||| ||||||||||||||||    
T  45989183 taaattgcctagaattctaaattctttaaaatttctctattaccccatccaaacacactct 45989243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 26162170 - 26162129
Alignment:
Q  25 ttgaggaaatgcaatgttatgagggaattcaaatactttgag 66  Q
    |||||| |||| ||||||||||||||||||||||||||||||    
T  26162170 ttgagggaatgtaatgttatgagggaattcaaatactttgag 26162129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 31632748 - 31632789
Alignment:
Q  25 ttgaggaaatgcaatgttatgagggaattcaaatactttgag 66  Q
    |||||| |||| ||||||||||||||||||||||||||||||    
T  31632748 ttgagggaatgtaatgttatgagggaattcaaatactttgag 31632789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 35776988 - 35776947
Alignment:
Q  25 ttgaggaaatgcaatgttatgagggaattcaaatactttgag 66  Q
    |||||| |||| ||||||||||||||||||||||||||||||    
T  35776988 ttgagggaatgtaatgttatgagggaattcaaatactttgag 35776947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 25189259 - 25189219
Alignment:
Q  25 ttgaggaaatgcaatgttatgagggaattcaaatactttga 65  Q
    |||||| ||||||||||| ||||||||||||||||||||||    
T  25189259 ttgaggtaatgcaatgttttgagggaattcaaatactttga 25189219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 128
Target Start/End: Original strand, 32651013 - 32651073
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 128  Q
    |||||||||||| ||| | |||||||||| |||| | ||||||||||||||||| ||||||    
T  32651013 taaattgcctaggattctgaattctttaagatttcccaattacctcatccaaactcactct 32651073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 129
Target Start/End: Original strand, 40495691 - 40495750
Alignment:
Q  70 aattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactcta 129  Q
    |||| |||| |||| ||||||||| |||||||   |||||||||||||||||||||||||    
T  40495691 aattccctataattctaaattcttcaaaatttctcaattacctcatccaaacacactcta 40495750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 128
Target Start/End: Original strand, 1580381 - 1580439
Alignment:
Q  71 attgcctagaattttaaattctttaaaattttcaaattacctcatccaa-acacactct 128  Q
    |||||||| |||||||||||||||||||  ||  ||||||||||||||| |||||||||    
T  1580381 attgcctaaaattttaaattctttaaaaaatttcaattacctcatccaacacacactct 1580439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 15990917 - 15990967
Alignment:
Q  25 ttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgc 75  Q
    |||||| |||| |||||  ||| ||||||||||||||||||||||||||||    
T  15990917 ttgaggtaatgtaatgtcttgaaggaattcaaatactttgagataaattgc 15990967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 66
Target Start/End: Original strand, 43791115 - 43791157
Alignment:
Q  24 gttgaggaaatgcaatgttatgagggaattcaaatactttgag 66  Q
    ||||||| |||| |||||| |||||||||||||||||||||||    
T  43791115 gttgagggaatgtaatgttttgagggaattcaaatactttgag 43791157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 128
Target Start/End: Original strand, 26416413 - 26416469
Alignment:
Q  71 attgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 128  Q
    ||||||||||||| ||||||||| |||||||   ||||||||||| ||||||||||||    
T  26416413 attgcctagaattctaaattcttcaaaatttctcaattacctcat-caaacacactct 26416469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 6498798 - 6498758
Alignment:
Q  25 ttgaggaaatgcaatgttatgagggaattcaaatactttga 65  Q
    |||||| |||| |||||| ||||||||||||||||||||||    
T  6498798 ttgagggaatgtaatgttttgagggaattcaaatactttga 6498758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 124
Target Start/End: Complemental strand, 30080368 - 30080312
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacaca 124  Q
    |||||||| ||||||| ||||||||| |||||||   |||||||||||| |||||||    
T  30080368 taaattgcttagaattctaaattcttcaaaatttctcaattacctcatcaaaacaca 30080312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 6e-40; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 23011835 - 23011949
Alignment:
Q  19 gtaatgttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatcc- 117  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||     
T  23011835 gtaatgttaaggaaatgtaatgttatgagggaattcaaatactttgagat-aattgcctagaattttaaattctttaaaatttctaaattacctcatcca 23011933  T
Q  118 aaacacactctaaagg 133  Q
    ||||||||||||||||    
T  23011934 aaacacactctaaagg 23011949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 30444915 - 30444804
Alignment:
Q  19 gtaatgttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatcca 118  Q
    ||||| || |||||||| ||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  30444915 gtaatattaaggaaatgtaatgttaggaaggaattcaaatactttgaggtaaattgcctagaattttaaattctttaaaatttccaaattacttcatcca 30444816  T
Q  119 aacacactctaa 130  Q
    ||||||||||||    
T  30444815 aacacactctaa 30444804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 36103202 - 36103308
Alignment:
Q  19 gtaatgttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatcca 118  Q
    ||||| ||||||||||| |||||||||| | |||||||||| ||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  36103202 gtaatattgaggaaatgtaatgttatgaagaaattcaaatatttt-aggtaaattgcctagaattttaaattctttaaaatttccaaattacctcatcca 36103300  T
Q  119 aacacact 126  Q
    ||||||||    
T  36103301 aacacact 36103308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 128
Target Start/End: Original strand, 29611812 - 29611872
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 128  Q
    ||||||||||| |||| ||||||||||||||||||| ||||||| ||||||||||||||||    
T  29611812 taaattgcctaaaattctaaattctttaaaattttccaattaccacatccaaacacactct 29611872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 44346281 - 44346221
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 128  Q
    |||||||||||||||| |||||||||||||||||   ||||||||||||||||||||||||    
T  44346281 taaattgcctagaattctaaattctttaaaatttctcaattacctcatccaaacacactct 44346221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 68 - 127
Target Start/End: Complemental strand, 31980106 - 31980047
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactc 127  Q
    |||||||||||||||| |||||||||||||||||   |||||||||||||||||||||||    
T  31980106 taaattgcctagaattctaaattctttaaaatttctcaattacctcatccaaacacactc 31980047  T

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Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 14727 - 14789
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 130  Q
    |||||||||||||||| |||||||||||||||||   |||| |||||||||||||||||||||    
T  14727 taaattgcctagaattctaaattctttaaaatttctcaatttcctcatccaaacacactctaa 14789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 13145073 - 13145131
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacact 126  Q
    |||||||||||||||||||||||||||||| ||| | |||||||||| |||||||||||    
T  13145073 taaattgcctagaattttaaattctttaaattttcccaattacctcacccaaacacact 13145131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 33376889 - 33376827
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 130  Q
    |||||| ||||||||| |||||||||||||||||   ||||||||||||||||||||||||||    
T  33376889 taaattacctagaattctaaattctttaaaatttatcaattacctcatccaaacacactctaa 33376827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 40733695 - 40733641
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaaca 122  Q
    ||||||||||||||||||||||||||||||||||   ||||||||||||||||||    
T  40733695 taaattgcctagaattttaaattctttaaaatttctcaattacctcatccaaaca 40733641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 43185469 - 43185531
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 130  Q
    ||||||| |||||||| |||||||||||||||||   ||||||||||||||||||||||||||    
T  43185469 taaattgtctagaattctaaattctttaaaatttctcaattacctcatccaaacacactctaa 43185531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 515514 - 515449
Alignment:
Q  19 gtaatgttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattt 84  Q
    ||||| ||||||||||| |||||||||| |||||||||||| |||||| ||||||||||| |||||    
T  515514 gtaatattgaggaaatgtaatgttatgaaggaattcaaatattttgaggtaaattgcctaaaattt 515449  T

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Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 29256973 - 29256913
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 128  Q
    |||||||||||||||| |||||||||||||||||   ||||||||| ||||||||||||||    
T  29256973 taaattgcctagaattctaaattctttaaaatttctcaattacctcgtccaaacacactct 29256913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 35978652 - 35978592
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 128  Q
    ||||||| ||||||||||||||||||||||||||   |||| |||||||||||||||||||    
T  35978652 taaattgactagaattttaaattctttaaaatttctcaattgcctcatccaaacacactct 35978592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 127
Target Start/End: Original strand, 10593562 - 10593620
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactc 127  Q
    ||||||||||||||||||||||| ||||||||||   |||||||||||||||||||||||    
T  10593562 taaattgcctagaattttaaatt-tttaaaatttctcaattacctcatccaaacacactc 10593620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 127
Target Start/End: Complemental strand, 31976725 - 31976666
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactc 127  Q
    |||||||||||||||| |||||||||||||||||   |||||||||||||||| ||||||    
T  31976725 taaattgcctagaattctaaattctttaaaatttctcaattacctcatccaaaaacactc 31976666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 126
Target Start/End: Complemental strand, 26520042 - 26519984
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacact 126  Q
    ||||||||||||||||||||||||||||||||||   |||||| | |||||||||||||    
T  26520042 taaattgcctagaattttaaattctttaaaatttatcaattactttatccaaacacact 26519984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 33986486 - 33986548
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 130  Q
    ||||||||||||||||   |||||||||||||||   ||||||||||||||||||||||||||    
T  33986486 taaattgcctagaattccgaattctttaaaatttctcaattacctcatccaaacacactctaa 33986548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 29482401 - 29482341
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 128  Q
    |||||| |||| |||| |||||||||||||||||   ||||||||||||||||||||||||    
T  29482401 taaatttcctataattctaaattctttaaaatttctcaattacctcatccaaacacactct 29482341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 23011760 - 23011801
Alignment:
Q  25 ttgaggaaatgcaatgttatgagggaattcaaatactttgag 66  Q
    |||||| |||| ||||||||||||||||||||||||||||||    
T  23011760 ttgagggaatgtaatgttatgagggaattcaaatactttgag 23011801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 21465352 - 21465308
Alignment:
Q  39 tgttatgagggaattcaaatactttgagataaattgcctagaatt 83  Q
    ||||||||||||||||||||||||| || |||||| |||||||||    
T  21465352 tgttatgagggaattcaaatactttaaggtaaattacctagaatt 21465308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 132
Target Start/End: Complemental strand, 28190291 - 28190227
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaag 132  Q
    |||||||| ||||||| ||| |||||| |||||||| ||||| ||||| |||| |||||||||||    
T  28190291 taaattgcgtagaattctaagttctttcaaattttcgaattatctcattcaaatacactctaaag 28190227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 128
Target Start/End: Original strand, 9983146 - 9983197
Alignment:
Q  77 tagaattttaaattctttaaaattttcaaattacctcatccaaacacactct 128  Q
    ||||||| ||||||||| |||||||   ||||||||||||||||||||||||    
T  9983146 tagaattctaaattcttcaaaatttctcaattacctcatccaaacacactct 9983197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 66
Target Start/End: Original strand, 13144615 - 13144650
Alignment:
Q  31 aaatgcaatgttatgagggaattcaaatactttgag 66  Q
    ||||| ||||||||||||||||||||||||||||||    
T  13144615 aaatgtaatgttatgagggaattcaaatactttgag 13144650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 71 - 130
Target Start/End: Complemental strand, 14013326 - 14013267
Alignment:
Q  71 attgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 130  Q
    ||||||||||||| ||||||| | ||||||||| ||||| ||| |||||| |||||||||    
T  14013326 attgcctagaattctaaattcatcaaaattttctaattaactcgtccaaatacactctaa 14013267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 1087906 - 1087844
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 130  Q
    |||||| |||| |||| |||||||||||||||||   ||||||||||| |||||| |||||||    
T  1087906 taaatttcctaaaattctaaattctttaaaatttctcaattacctcattcaaacatactctaa 1087844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 7079780 - 7079825
Alignment:
Q  70 aattgcctagaattttaaattctttaaaattttcaaattacctcat 115  Q
    |||| |||||||||||||||||||||||||||   |||||||||||    
T  7079780 aattacctagaattttaaattctttaaaatttctcaattacctcat 7079825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 137
Target Start/End: Original strand, 34009178 - 34009247
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaaaggaatt 137  Q
    |||||||||||  ||| |||||||||| ||||||   || ||||||||||||||||||||| ||| ||||    
T  34009178 taaattgcctaagattctaaattctttgaaatttctcaactacctcatccaaacacactcttaagaaatt 34009247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 8049292 - 8049328
Alignment:
Q  37 aatgttatgagggaattcaaatactttgagataaatt 73  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  8049292 aatgttttgagggaattcaaatactttgaggtaaatt 8049328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 13404960 - 13404912
Alignment:
Q  25 ttgaggaaatgcaatgttatgagggaattcaaatactttgagataaatt 73  Q
    |||||| |||| |||||| ||||||||||||| ||||||||||| ||||    
T  13404960 ttgagggaatgtaatgttttgagggaattcaactactttgagatgaatt 13404912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 25 - 127
Target Start/End: Original strand, 11276 - 11378
Alignment:
Q  25 ttgaggaaatgcaatgttatgagggaattcaaatactttgagataaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacaca 124  Q
    ||||||||||| |||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||    
T  11276 ttgaggaaatgtaatgttatgaaggaattcaaatactttgaggtaaattgcctaaaattttaaattctttacaatttccaaattacctcatccaaacaca 11375  T
Q  125 ctc 127  Q
    |||    
T  11376 ctc 11378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 4508 - 4570
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacactctaa 130  Q
    |||||||||||||||| ||||||||||||||||| | |||||  |||||||||||||||||||    
T  4508 taaattgcctagaattctaaattctttaaaatttcccaattagttcatccaaacacactctaa 4570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 11556 - 11499
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcatccaaacacac 125  Q
    |||||| | ||||||| ||||||||||||||||||| || ||||||||||||||||||    
T  11556 taaattacttagaattctaaattctttaaaattttccaaatacctcatccaaacacac 11499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0301 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 7641 - 7688
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaattacctcat 115  Q
    |||||||||||||||| |||||||||||||||||   |||||||||||    
T  7641 taaattgcctagaattctaaattctttaaaatttctcaattacctcat 7688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 19367 - 19326
Alignment:
Q  68 taaattgcctagaattttaaattctttaaaattttcaaatta 109  Q
    ||||||||||| |||| ||||||||||||||||| |||||||    
T  19367 taaattgcctaaaattctaaattctttaaaatttccaaatta 19326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0318 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 3358 - 3406
Alignment:
Q  80 aattttaaattctttaaaattttcaaattacctcatccaaacacactct 128  Q
    |||| |||||||||||||||||   |||||||||||||||| |||||||    
T  3358 aattctaaattctttaaaatttctcaattacctcatccaaagacactct 3406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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