View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19083_low_4 (Length: 570)
Name: NF19083_low_4
Description: NF19083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19083_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 47 - 555
Target Start/End: Original strand, 480294 - 480803
Alignment:
| Q |
47 |
ccatatactctcgttcaaatgaacaatttgttgatttagatggatctacacgaatcatcttagctaaagaagacgctggttgtctcggttagggaagaga |
146 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
480294 |
ccatatactctcgttcaaatgaacaatttgttgatttagaaggatctacacgaatcatcttagctaaagaagacgctggttgtctcggtcagggaagaga |
480393 |
T |
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| Q |
147 |
cattgattcacttcctagtagaatcacaacatttaacacggggggcacgtgttactagtcttcttgcacacacaagaactaatacgaagagaatatcttt |
246 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
480394 |
cattgattcacttcctagtagaatcacaacatttaacacggggggcacgtgttactagtcttcttgcacacacaagagctaatacgaagagaatttcttt |
480493 |
T |
|
| Q |
247 |
ttcctcccttcgcctttctcatgcgtcctccgttattacaattttactcccatttatattatataataatccgaagg-nnnnnnnnnnttaagattatat |
345 |
Q |
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| T |
480494 |
ttcctcccttcgcctttctcttgcgtcctccgttattacaattttactcccattcatattatataataatttgaaggaaaaaaaaaagtttatattatat |
480593 |
T |
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| Q |
346 |
aatccgaaacatacctatatataagcaatactcataaacttccttcatttcaacagttacgattttctaaccgaatcacccaaaatcaaaaccactctgc |
445 |
Q |
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| T |
480594 |
aatccgaaacatacctatatataagcaatactcataaacttccttcatttcaacagttacgattttctaaccgaatcacccaaaatcaaaaccactccgc |
480693 |
T |
|
| Q |
446 |
attgtgccattgttaggttaacttggtctatttcatcacttttcaacccttttcaaccactaaacaaaaggttaggtcacatttctttaatcatttgttc |
545 |
Q |
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| T |
480694 |
attgtgccattgttaggttaacttggtctatttcatcacttttcaacccttttcaaccactaaacaaaaggttaggtcacatttctttaatcatttgttc |
480793 |
T |
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| Q |
546 |
tttaatttgt |
555 |
Q |
| |
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|||||||||| |
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| T |
480794 |
tttaatttgt |
480803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 24 - 180
Target Start/End: Original strand, 482324 - 482479
Alignment:
| Q |
24 |
aatcatcgttgttaaatactataccatatactctcgttcaaatgaacaatttgttgatttagatggatctacacgaatcatcttagctaaagaagacgct |
123 |
Q |
| |
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||||||||| || ||||| || |||||||||| || ||||| |||||||||||||||| |||||||||||| |||||||||||| | |||| | ||| |
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| T |
482324 |
aatcatcgtggtgaaatattagaccatatactatcattcaa-tgaacaatttgttgatgcagatggatctacgcgaatcatcttacccgaagagaatgct |
482422 |
T |
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| Q |
124 |
ggttgtctcggttagggaagagacattgattcacttcctagtagaatcacaacattt |
180 |
Q |
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| T |
482423 |
ggttgtctcggttgaggaagaaccattgattcacttcccaatagaaccacaacattt |
482479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 496 - 555
Target Start/End: Complemental strand, 48094949 - 48094890
Alignment:
| Q |
496 |
tttcaaccactaaacaaaaggttaggtcacatttctttaatcatttgttctttaatttgt |
555 |
Q |
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| T |
48094949 |
tttcaaccactaaacaaaaggttcgttcactttttttcaagcatttgttctttaatttgt |
48094890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 477 - 549
Target Start/End: Original strand, 5982050 - 5982122
Alignment:
| Q |
477 |
ttcatcacttttcaacccttttcaaccactaaacaaaaggttaggtcacatttctttaatcatttgttcttta |
549 |
Q |
| |
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| T |
5982050 |
ttcatcacatttcaacccttttcaaccaccaaacaaaatgtcaagtcgcattttgtcaatcatttgttgttta |
5982122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 468 - 552
Target Start/End: Original strand, 41220533 - 41220617
Alignment:
| Q |
468 |
ttggtctatttcatcacttttcaacccttttcaaccactaaacaaaaggttaggtcacatttctttaatcatttgttctttaatt |
552 |
Q |
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| T |
41220533 |
ttggtctaaatcatcacattttaaaccttttcaaacatcaaacataaggcaaggtcacatttctttgatctattgttctttaatt |
41220617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 477 - 553
Target Start/End: Original strand, 1642875 - 1642951
Alignment:
| Q |
477 |
ttcatcacttttcaacccttttcaaccactaaacaaaaggttaggtcacatttctttaatcatttgttctttaattt |
553 |
Q |
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| T |
1642875 |
ttcatcacattttaagccttttcgaccaccgaacataaggtaaggtcacatttcttcagtcatttgttccttaattt |
1642951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 513 - 545
Target Start/End: Complemental strand, 27679411 - 27679379
Alignment:
| Q |
513 |
aaggttaggtcacatttctttaatcatttgttc |
545 |
Q |
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| T |
27679411 |
aaggttatgtcacatttctttaatcatttgttc |
27679379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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