View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19083_low_5 (Length: 526)
Name: NF19083_low_5
Description: NF19083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19083_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 221 - 511
Target Start/End: Original strand, 40523450 - 40523740
Alignment:
| Q |
221 |
gcaagaatatgatcatgtttctcctacgtttaaaattgtattcaaacacaaaataatcgttaaacgaatccaaaacaaatcagtgcttgttgtgctcata |
320 |
Q |
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| T |
40523450 |
gcaagaatatgatcatgtttctcctacgtataaaattgtattcaaacacaaaataatcgttaaacgaatccaaaacaaatcagtgcttgttgtgctcata |
40523549 |
T |
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| Q |
321 |
taaataataatgtttgcgcaaacttgcagtacataagagcgtgtttggttttaaattgcaatcataaacaactcaactctatagattacaatggatatgg |
420 |
Q |
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| T |
40523550 |
taaataataatgtttgcgcaaacttgtagtacataagagcgtgtttggttttaagttgcaatcataaagaactcaactctatagattacaatgggtatgg |
40523649 |
T |
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| Q |
421 |
ttgtattgacttaaaaccttagaccgtgctcttctcaatctcaaagtttgagattcgattcttacctgagtcaatttagatagattaattt |
511 |
Q |
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| T |
40523650 |
ttgtattgacttgaaactttagattgtgctcttctcaatctcaaagtttgagatttgattcttacctgagtcaatttagatagattaattt |
40523740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 10 - 152
Target Start/End: Original strand, 40523232 - 40523381
Alignment:
| Q |
10 |
aagaatatgcat-ttagtgcaatgataattaattgcgaagttgcatgatatg------gttatataaggtaacgtgcttaaaaacaatttattttgtttg |
102 |
Q |
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| T |
40523232 |
aagaatatgcatgttagtgcaatgataattaattgcgaagttgcatgatatggttatggttatataaggtaacgtgcttaaaaacaatttattttgtttg |
40523331 |
T |
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| Q |
103 |
attaagtacaaaatccaccaccnnnnnnnttaagtgcaaaatctagcctt |
152 |
Q |
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| T |
40523332 |
attaagtacaaaatccaccaccaaaaaaattaagtacaaaatctagcctt |
40523381 |
T |
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