View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19083_low_9 (Length: 452)
Name: NF19083_low_9
Description: NF19083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19083_low_9 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 19 - 452
Target Start/End: Complemental strand, 41249836 - 41249410
Alignment:
| Q |
19 |
tatacattattcaactggttttttatatgcacacacaaaaagctacggttgcaatttctttaaaatataccgtcttgtctttttgttgagtaaatgtaat |
118 |
Q |
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| T |
41249836 |
tatacattattcaactggttttatatatgcacacacaaaaagctacggttgcaatttctttaaaatataccgtcttgtctttttgttgagtaaatgtaat |
41249737 |
T |
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| Q |
119 |
ttgtacgtcttcgccatattgacatgttttactgagtaatagaccgtccattatttcatcaaaagatagagaacagagcaaatttacagtgtataggtac |
218 |
Q |
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| T |
41249736 |
ttgtacgtcttcgccatattgacatgttttactgagtaatagaccgtccattatttcatcaaaagatagagaacagagcaaatttacagtgta--ggtac |
41249639 |
T |
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| Q |
219 |
atatatacaagaaaaggaatacaaccacgttgcaagtaccaattatatccaagcaagatatccatgtaatgtactgattagcaaccacgttgtgaacaga |
318 |
Q |
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| T |
41249638 |
atatatacaagaaaaggaatacaaccacgttgcaagtaccaattatatccaagcaagatatccatgtaatgtactgattagaaaccacgttgtgaacaga |
41249539 |
T |
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| Q |
319 |
ggttggggagcatctattctgtatatttttacatcacgatcagaaatatgagaggaccagcaaaacgagtctgccttagagtttatagtgatatatttaa |
418 |
Q |
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| T |
41249538 |
ggttggggagcatctattctgtatatttttacatcacgatcagaaatatgagaggaccagcaaaacgagtctgccttagagtttatagtgatat-----a |
41249444 |
T |
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| Q |
419 |
tttggtctaacaataacaagtttgtttgtgttcc |
452 |
Q |
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| T |
41249443 |
tttggtctaacaataacaagtttgtttgtgttcc |
41249410 |
T |
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