View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19084_high_12 (Length: 462)
Name: NF19084_high_12
Description: NF19084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19084_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 17 - 455
Target Start/End: Original strand, 52240396 - 52240834
Alignment:
| Q |
17 |
atattctacacctctcatagaaactgtcttttgcttttcatcttccttctttggattcataggaatatcaaaactatttgagcttttcgccatgtttgct |
116 |
Q |
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| T |
52240396 |
atattctacacctctcatagaaactgtcttttgcttttcatcttccttctttggattcataggaatatcaaaactatttgagcttttcgccatgtttgct |
52240495 |
T |
|
| Q |
117 |
tctctcgactttctggttatcttatcataatctgacataaaactattgacagttatcacagtgtggcaaacctcgcacacaaagatagaaagaagaatgc |
216 |
Q |
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| T |
52240496 |
tctctcgactttctggttatcttatcataatctgacataaaactattgacagttatcacagtgtggcaaacctcacacacaaagatagaaagaagaatgc |
52240595 |
T |
|
| Q |
217 |
caaagatagctttaccttgtttcttactatttttaccgaacagagaatgtaatgatttgggctcatgtttgcgagtttcacttgctgcttcagtttttcc |
316 |
Q |
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| T |
52240596 |
caaagatagctttaccttgtttcttactatttttaccgaacagagaatgtaatgatttgggctcatgtttgtgagtttcacttgctgcttcagtttttcc |
52240695 |
T |
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| Q |
317 |
atcaaagactgtctcatttgtagaatgagtacttgattctgctttagcatcatatgtaataggactactaagaacatctttaataagagtttgacggcta |
416 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
52240696 |
atcaaagactgtctcatttgtggaatgagtacttgattctgctttagcatcatatgtaataggactaccaagaacatctttaataagagtttgacggctg |
52240795 |
T |
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| Q |
417 |
ctcgatgaatctggttgagctttggcggaaatgagatgg |
455 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |
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| T |
52240796 |
ctcgatgaatctggttgagctttggcggaaatgatatgg |
52240834 |
T |
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