View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19084_high_14 (Length: 455)
Name: NF19084_high_14
Description: NF19084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19084_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 146; Significance: 1e-76; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 107 - 288
Target Start/End: Complemental strand, 26967980 - 26967798
Alignment:
| Q |
107 |
cgatttaattcttgtatatggttggtgtaattannnnnnnacacttaaaaattaatcataattgttagatgattatgaacatttaattttaatcataagt |
206 |
Q |
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| T |
26967980 |
cgatttaattcttgtatatggttggtgtaattatttttttacacttaaaaattaatcataattgttagatgattatgaacatttaattttaatcatgaat |
26967881 |
T |
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| Q |
207 |
attttt-aagtcacatatatgtggttgtgatttgtttaaagtggaaataaaattgatataaaccatatatgaaaattaaactc |
288 |
Q |
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| T |
26967880 |
attttttaagtcacatatatgtggttgtgatttgtttaaagtggaaataaaattgatataaaccatatatgaaaattaaactc |
26967798 |
T |
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Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 352 - 436
Target Start/End: Complemental strand, 26967734 - 26967650
Alignment:
| Q |
352 |
cagattcttccatctccaactactggatcatttgctaataatcaaggcttcaattggaagaataattatgaggaaaagcaagaga |
436 |
Q |
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| T |
26967734 |
cagattcttccatctccaactactggatcatttgctaataatcaaggcttcaattggaagaataattatgaggaaaagcaagaga |
26967650 |
T |
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