View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19084_high_16 (Length: 448)
Name: NF19084_high_16
Description: NF19084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19084_high_16 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 14368290 - 14368640
Alignment:
| Q |
1 |
tcaaattgggagaggtatctaacatgcatatgaatcgtctctttcatttcattcaactggtttaaatccaaaatagtcactgtttgccaagaaagaattg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14368290 |
tcaaattgggagaggtatctaacatgcatatgaatcgtctctttcatttcattcaactggtttaaatccaaaatagtcactgtttgccaagaaagaattg |
14368389 |
T |
|
| Q |
101 |
gaatcaacaaaatagatgcacaataaacttttctagactaaagggcatgcatttccaaaacaatccatatgttgtcgacaataacagctaccaaattaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14368390 |
taatcaacaaaatagatgcacaataaacttttctagattaaagggcatgcatgtccaaaacaatccatatgttgtcgacaataacagctaccaaattaca |
14368489 |
T |
|
| Q |
201 |
caacaagacaagacaattttcaaaacttcccttaaagtttggtaatcaaccttttcaatggttctagatatctacaatttgttcccttcctcactgtttc |
300 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
14368490 |
caacaagacaagacaattttcaaaaattcccttaaagtttggtaatcaaccttttcaatggttctagatatctacaatttgttcccttcctcactgattc |
14368589 |
T |
|
| Q |
301 |
ctttgttagctactgtattcaactccggtgttctttaatgctttcaacttt |
351 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
14368590 |
atttgttcgctactgtattcaactccagtgttctttaatgctttcaacttt |
14368640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 275; Significance: 1e-153; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 26463856 - 26464205
Alignment:
| Q |
1 |
tcaaattgggagaggtatctaacatgcatatgaatcgtctctttcatttcattcaactggtttaaatccaaaatagtcactgtttgccaagaaagaattg |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
26463856 |
tcaaattgagagaggtatctaacatgcatatgaatcgtctctttcatttcattcaactggtttaaatctaaaatagtcagtgtttgccaagaaagaattg |
26463955 |
T |
|
| Q |
101 |
gaatcaacaaaatagatgcacaataaacttttctagactaaagggcatgcatttccaaaacaatccatatgttgtcgacaataacagctaccaaattaca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26463956 |
gaatcaacaaaatagatgcacaataaacttttctagattccagggcatgcatgtccaaaacaatccatatgttgtcgacaataacagctaccaaattaca |
26464055 |
T |
|
| Q |
201 |
caacaagacaagacaattttcaaaacttcccttaaagtttggtaatcaaccttttcaatggttctagatatctacaatttgttcccttcctcactgtttc |
300 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| || ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
26464056 |
gaacaagacaagacaattttcaaaatttccctt-aattttggaaatcaaccttttcaatggttctagatatctacaatctgttcccttcctcactgtttc |
26464154 |
T |
|
| Q |
301 |
ctttgttagctactgtattcaactccggtgttctttaatgctttcaacttt |
351 |
Q |
| |
|
|||||| |||||||||||||||| | | |||||||||||||||||||||| |
|
|
| T |
26464155 |
ttttgttcgctactgtattcaacttcagcgttctttaatgctttcaacttt |
26464205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 370 - 425
Target Start/End: Complemental strand, 29481974 - 29481919
Alignment:
| Q |
370 |
ggttaaaacgttgaaatttattttccatttgagttagagtcttgtgagactcttgt |
425 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||||||||| ||| |||| |
|
|
| T |
29481974 |
ggttaaaatgttgaaatttaatttccatttgagttagagtcttgtgaaacttttgt |
29481919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 425
Target Start/End: Original strand, 24146612 - 24146668
Alignment:
| Q |
369 |
gggttaaaacgttgaaatttattttccatttgagttagagtcttgtgagactcttgt |
425 |
Q |
| |
|
||||||||| ||| ||||||| |||||||||||||||||||||||||| ||| |||| |
|
|
| T |
24146612 |
gggttaaaatgtttaaatttaatttccatttgagttagagtcttgtgaaacttttgt |
24146668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 432
Target Start/End: Complemental strand, 9406301 - 9406238
Alignment:
| Q |
369 |
gggttaaaacgttgaaatttattttccatttgagttagagtcttgtgagactcttgttatttct |
432 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||| ||||||||| ||| || |||||||| |
|
|
| T |
9406301 |
gggtttaaacgttgaaatttatttttcatttgagttatagtcttgtggaactttttttatttct |
9406238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University