View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19084_high_29 (Length: 324)
Name: NF19084_high_29
Description: NF19084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19084_high_29 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 114 - 324
Target Start/End: Original strand, 39758149 - 39758359
Alignment:
| Q |
114 |
aagttcattttcttttttcgatgccaacgacatgctcttttcaagcttcaaattcaacgtctcattctcatccacaatgccttgcaattcattttcctta |
213 |
Q |
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| T |
39758149 |
aagttcattttcttttttcgatgccaacgacatgctcttttcaagcttcaaattcaacgtctcattctcatccacaatgccttgcaattcattttcctta |
39758248 |
T |
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| Q |
214 |
tccattaatttctccttcaactcctcaatttcggatttctttctatccaattcggattccctctgattcgattctgatttcatcctttcaatcaactcgt |
313 |
Q |
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| T |
39758249 |
tccatcaatttctccttcaactcctcaattttggatttctttctatccaattcggattccctctgattcgattctgatttcatcctttcaatcaactcgt |
39758348 |
T |
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| Q |
314 |
aagcattcatt |
324 |
Q |
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| T |
39758349 |
aagcattcatt |
39758359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 29 - 321
Target Start/End: Original strand, 39763800 - 39764092
Alignment:
| Q |
29 |
atatgctttgcaatgtggtctccttatccatcaattcacccttcaataccgcaacatatttgtctaaccttttaagctccttgttaagttcattttcttt |
128 |
Q |
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||||| |||||| ||| |||||||||||||||| ||||||||||||| || | ||||||| ||||||||||||||| ||||| |||| ||| |||||| |
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| T |
39763800 |
atatgttttgcagtgttgtctccttatccatcatttcacccttcaatgccactacatattcgtctaaccttttaagttccttcttaaattctagttcttt |
39763899 |
T |
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| Q |
129 |
tttcgatgccaacgacatgctcttttcaagcttcaaattcaacgtctcattctcatccacaatgccttgcaattcattttccttatccattaatttctcc |
228 |
Q |
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| T |
39763900 |
tttcgatgacagtgacacacttttttcaagcttcaaattcaacctctcattctcattcacaataccttgcaactcattttccttatccatcagtttctct |
39763999 |
T |
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| Q |
229 |
ttcaactcctcaatttcggatttctttctatccaattcggattccctctgattcgattctgatttcatcctttcaatcaactcgtaagcattc |
321 |
Q |
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| T |
39764000 |
ttcaactcctcaatttcggctttctttctttccaattcggactccctctgactcaattctgattttacccgttcgatcaactcataggcattc |
39764092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 39754795 - 39754895
Alignment:
| Q |
19 |
tgaacctgttatatgctttgcaatgtggtctccttatccatcaattcacccttcaataccgcaacatatttgtctaaccttttaagctccttgttaagtt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
39754795 |
tgaacctgttatatgctttgcaatgtggtctccttatccatcaattcacccttcaataccgccacatatttgtccaaccttttaagctccttgttaagtt |
39754894 |
T |
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| Q |
119 |
c |
119 |
Q |
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| T |
39754895 |
c |
39754895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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