View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19084_high_33 (Length: 309)
Name: NF19084_high_33
Description: NF19084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19084_high_33 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 302
Target Start/End: Complemental strand, 40427056 - 40426772
Alignment:
| Q |
18 |
atctgttgcctcagcaacaccaccaactaaattactcaaggcttctcccaaaatcatttcatttgattactcgaataatgattcaaaggttaagaagcct |
117 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40427056 |
atctgttgcctcagcaacaccaccaactaaactactcaaggcttctcccaaaatcatttcatttgattactcgaataatgattcaaaggttaagaagcct |
40426957 |
T |
|
| Q |
118 |
aaaaccgagatcgggtatggtgaaaacttgaattttggaagtgtgatttctcaaggtgattattataaacgagagaacaaggttgctgctgtaaatagaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40426956 |
aaaaccgagatcgggtatggtgaaaacttgaattttggaagtgtgatttctcaaggtgattattataaacgagagaacaaggtttctgctgtaaatagaa |
40426857 |
T |
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| Q |
218 |
accctattcaggctcaagatcatgttatggccgaaagaagacgaagggaaaagcttagccagagattcattgctctttcatctct |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40426856 |
accctattcaggctcaagatcatgttatggccgaaagaagacgaagggaaaagcttagccagagattcatttctctttcatctct |
40426772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 296
Target Start/End: Complemental strand, 40442144 - 40441866
Alignment:
| Q |
18 |
atctgttgcctcagcaacaccaccaactaaattactcaaggcttctcccaaaatcatttcatttgattactcgaataatgattcaaaggttaagaagcct |
117 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40442144 |
atctgttgcctcagcaacaccaccaactaaactactcaaggcttctcccaaaatcatttcatttgattactcgaataatgattcaaaggttaagaagcct |
40442045 |
T |
|
| Q |
118 |
aaaaccgagatcgggtatggtgaaaacttgaattttggaagtgtgatttctcaaggtgattattataaacgagagaacaaggttgctgctgtaaatagaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40442044 |
aaaaccgagatcgggtatggtgaaaacttgaattttggaagtgtgatttctcaaggtgattattataaacgagagaacaaggtttctgctgtaaatagaa |
40441945 |
T |
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| Q |
218 |
accctattcaggctcaagatcatgttatggccgaaagaagacgaagggaaaagcttagccagagattcattgctctttc |
296 |
Q |
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||||||| ||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
40441944 |
accctatgcaggctcgagatcatgttatcgccgaaagaaaacgaagggaaaagcttagccagagattcattgcactttc |
40441866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 297
Target Start/End: Original strand, 4947339 - 4947407
Alignment:
| Q |
229 |
gctcaagatcatgttatggccgaaagaagacgaagggaaaagcttagccagagattcattgctctttca |
297 |
Q |
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|||| ||| ||||| ||||||||||||| ||||||||||||||||| || || ||||| ||||||||| |
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| T |
4947339 |
gctcgagaacatgtaatggccgaaagaaaacgaagggaaaagcttacccgaagtttcatcgctctttca |
4947407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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