View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19084_high_34 (Length: 304)
Name: NF19084_high_34
Description: NF19084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19084_high_34 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 13 - 289
Target Start/End: Complemental strand, 35561818 - 35561541
Alignment:
| Q |
13 |
aatatttggggactaaaacttggtgaaattttttagaggaactaaaaaacaaagtttgaaaattttatagagagcaaaacnnnnnnnnn-caagataagg |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
35561818 |
aatatttggggactaaaacttggtgaaattttttagaggaactaaaaaataaagtttgaaaattttatagagagcaaaacttttttttttcaagataagg |
35561719 |
T |
|
| Q |
112 |
gggcaaaacttatttaaccnnnnnnnnttggcatacataatgtagcaactattcactcaaaattgatatactaatgaatgtttagattcagtatgatcag |
211 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35561718 |
gagcaaaacttatttaaccaaaaaaaaatggcatacataatgtagcaactattcactcaaaattgatatactaatgaatgtttagattcagtatgatcag |
35561619 |
T |
|
| Q |
212 |
tttgaaagaatcacgacgagctaccgtaaattttcaaatgctacactttgtagtttcaagcaaatcgtagtattatgt |
289 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35561618 |
tttgaaagaatcacgacgagctatcgtaatttttcaaatgctacactttgtagtttcaagcaaatcgtagtattatgt |
35561541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University