View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19084_high_37 (Length: 299)
Name: NF19084_high_37
Description: NF19084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19084_high_37 |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 13628685 - 13628977
Alignment:
| Q |
1 |
cctgcaggtgcatttccaccacctggcattcggattgacacctgtttcttcttaacccatgtcgtcgtgcaccaagagaaaagctacaaatacatcaaac |
100 |
Q |
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| T |
13628685 |
cctgcaggtgcatttccaccacctggcattcggattgacacctgtttcttcttaacccatgtcgtcgtgcaccaagagaaaagctacaaatacatcaaac |
13628784 |
T |
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| Q |
101 |
aaatattcatttttatgatcaagctataaatagaaaatgtattgt----gctatagcactgctatttatcaacactgactaataatcttatggaggttac |
196 |
Q |
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| T |
13628785 |
aaatattcatttttatgatcaagctataaatagaaaatgtattgtgctagctatagcactgctatttatcaacactgactaataatcttacggaggttac |
13628884 |
T |
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| Q |
197 |
ggttagacatacctgagcatcagcatctgaagttaccattgtactcagtcgaggagaaaacactataccagtgatgtgtttttggtgacccct |
289 |
Q |
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| T |
13628885 |
ggttagacatacctgagcatcagcatctgaagttaccattgtattcagtcgaggagaaaacactataccagtgatgtgtttttggtgacccct |
13628977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 195 - 287
Target Start/End: Original strand, 13684810 - 13684902
Alignment:
| Q |
195 |
acggttagacatacctgagcatcagcatctgaagttaccattgtactcagtcgaggagaaaacactataccagtgatgtgtttttggtgaccc |
287 |
Q |
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| T |
13684810 |
acggttaaacatacctgagcatcagcgcccgaagaaaccattatattcagttgaggagaaaatactataccagtaatgtactttcggtgaccc |
13684902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 83
Target Start/End: Complemental strand, 30442168 - 30442092
Alignment:
| Q |
7 |
ggtgcatttccaccacctggcattcggattgacacctgtttcttcttaacccatgtcgtcgtgcaccaagagaaaag |
83 |
Q |
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| T |
30442168 |
ggtgcatttccaccacctagcatctggattgacactgaattcttcttaatccatttgctcatgcaccaagagaaaag |
30442092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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