View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19084_high_39 (Length: 287)
Name: NF19084_high_39
Description: NF19084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19084_high_39 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 8 - 273
Target Start/End: Original strand, 6627792 - 6628057
Alignment:
| Q |
8 |
gagcacagaggttggtttttctcgatctccatagccatccctctcattctcccagaaaacatcaactccagcttttctactaagagcattatagatactg |
107 |
Q |
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| T |
6627792 |
gagcacagaggttggtttttctcgatctccatagccatccctctcattctcccagaaaacatcaactccagcttttctactaagagcattatagatactg |
6627891 |
T |
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| Q |
108 |
aaaacaaaagaatgcaggtctttgtcttggtcgcagaaactcaagtacacatcgtacctcgccctctttggattagtaggagttctaatagaaggtgtgg |
207 |
Q |
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| T |
6627892 |
aaaacaaaagaatgcaggtctttgtcttggtcgcagaaactcaagtacacatcgtacctcgccctctttggattagtaggagttctaatagaaggtgtgg |
6627991 |
T |
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| Q |
208 |
atttaagtttgaggtgcctttttgagttggaagtgaaagaaaacatggatggaatagatgaaaatt |
273 |
Q |
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| T |
6627992 |
atttaagtttgaggtgcctttttgagttggaagtgaaagaaaacatggatggaatagatgaaaatt |
6628057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 186
Target Start/End: Original strand, 6551605 - 6551652
Alignment:
| Q |
139 |
cgcagaaactcaagtacacatcgtacctcgccctctttggattagtag |
186 |
Q |
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| T |
6551605 |
cgcagaaactcaagtacacattgaacctcttcctctttggattagtag |
6551652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 6551502 - 6551578
Alignment:
| Q |
30 |
cgatctccatagccatccctctcattctcccagaaaacatcaactccagcttttctactaagagcattatagatact |
106 |
Q |
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| T |
6551502 |
cgatctccataaccaagcctcttttcctcccagaaaacaacaaatccagcttttatgctaagagtcttatagatact |
6551578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 6646032 - 6645980
Alignment:
| Q |
131 |
gtcttggtcgcagaaactcaagtacacatcgtacctcgccctctttggattag |
183 |
Q |
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| T |
6646032 |
gtcttggtgacagaaactcaagtacacattgtacctctcactctttgaattag |
6645980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 6747767 - 6747731
Alignment:
| Q |
131 |
gtcttggtcgcagaaactcaagtacacatcgtacctc |
167 |
Q |
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| T |
6747767 |
gtcttcgtcgcagaaactcaagtacacatggtacctc |
6747731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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