View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19084_high_41 (Length: 279)
Name: NF19084_high_41
Description: NF19084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19084_high_41 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 11 - 261
Target Start/End: Original strand, 54790844 - 54791094
Alignment:
| Q |
11 |
ttatacttatgaactgacatttgtaattgtatgcagagcttcaatggactacagctctgaagaagagtcggatatcagtgagtctgagattgaggaatac |
110 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
54790844 |
ttatacttatgaactgacattcgtaactgtatgcagagcttcaatggactacagctctgaagaagagtcagatatcagtgagtctgagattgaggaatac |
54790943 |
T |
|
| Q |
111 |
tctgacaaaccttataaggagttaaaggatggtaaatacaaagtgaagaacttaaacggcacactcaggtgcccatattgtgctggaaaaaagaagcaag |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54790944 |
tctgacaaaccttataaggagttaaaggatggtaaatacaaagtgaagaacttaaacggcacactcaggtgcccatattgtgctggaaaaaagaagcaag |
54791043 |
T |
|
| Q |
211 |
agttcaaatataaggatttgatgcaacatgcaaccggagtaagcaaaggtt |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54791044 |
agttcaaatataaggatttgatgcaacatgcaaccggagtaagcaaaggtt |
54791094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 11 - 261
Target Start/End: Complemental strand, 54778301 - 54778051
Alignment:
| Q |
11 |
ttatacttatgaactgacatttgtaattgtatgcagagcttcaatggactacagctctgaagaagagtcggatatcagtgagtctgagattgaggaatac |
110 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
54778301 |
ttatacttatgaactgacattcgtaactgtatgcagagcttcaatggactacagctctgaagaagagtcagatatcagtgagtctgagattgaggaatac |
54778202 |
T |
|
| Q |
111 |
tctgacaaaccttataaggagttaaaggatggtaaatacaaagtgaagaacttaaacggcacactcaggtgcccatattgtgctggaaaaaagaagcaag |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54778201 |
tctgacaaaccttataaggagttaaaggatggtaaatacaaagtgaagaacttaaacggcacactcaggtgcccatattgtgctggaaaaaagaagcaag |
54778102 |
T |
|
| Q |
211 |
agttcaaatataaggatttgatgcaacatgcaaccggagtaagcaaaggtt |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
54778101 |
agttcaaatataaggatttgatgcaacatgaaaccggagtaagcaaaggtt |
54778051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 11 - 261
Target Start/End: Original strand, 52283502 - 52283752
Alignment:
| Q |
11 |
ttatacttatgaactgacatttgtaattgtatgcagagcttcaatggactacagctctgaagaagagtcggatatcagtgagtctgagattgaggaatac |
110 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
52283502 |
ttatacttacgaactgacatttgtaattgtatgcagagcttcaatggactacagctctgaagaagagtcagatatcagcgagtctgagattgaggaatac |
52283601 |
T |
|
| Q |
111 |
tctgacaaaccttataaggagttaaaggatggtaaatacaaagtgaagaacttaaacggcacactcaggtgcccatattgtgctggaaaaaagaagcaag |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
52283602 |
tctgacaaaccttataaggagttaaaggatggtaaatacaaagtgaagaatttaaacggtacactcaggtgtccatattgtgctggaaaaaagaagcaag |
52283701 |
T |
|
| Q |
211 |
agttcaaatataaggatttgatgcaacatgcaaccggagtaagcaaaggtt |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
52283702 |
agttcaaatataaggatttgatgcaacatgcaactggagtaagcaaaggtt |
52283752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 22 - 261
Target Start/End: Original strand, 798789 - 799028
Alignment:
| Q |
22 |
aactgacatttgtaattgtatgcagagcttcaatggactacagctctgaagaagagtcggatatcagtgagtctgagattgaggaatactctgacaaacc |
121 |
Q |
| |
|
|||||||||||| ||| || |||||| |||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
798789 |
aactgacatttgaaatcttacgcagagtttcaatggactacagctctgaagaagagtcagagatcagtgagtctgagatcgaggaatactctgagaaacc |
798888 |
T |
|
| Q |
122 |
ttataaggagttaaaggatggtaaatacaaagtgaagaacttaaacggcacactcaggtgcccatattgtgctggaaaaaagaagcaagagttcaaatat |
221 |
Q |
| |
|
||| | ||||||| || |||||||||||||| |||||| || || || || |||||||| ||||| ||||||| || |||||||| ||||| ||| |
|
|
| T |
798889 |
atatgaagagttaagggccggtaaatacaaagtcaagaacaacaatgggactcttaggtgcccgtattgctctggaaagaaaaagcaagaattcaagtat |
798988 |
T |
|
| Q |
222 |
aaggatttgatgcaacatgcaaccggagtaagcaaaggtt |
261 |
Q |
| |
|
|||||| || ||||||||||| | |||||| ||||||||| |
|
|
| T |
798989 |
aaggatctgttgcaacatgcatctggagtaggcaaaggtt |
799028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University