View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19084_high_44 (Length: 275)
Name: NF19084_high_44
Description: NF19084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19084_high_44 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 22 - 259
Target Start/End: Complemental strand, 43212020 - 43211780
Alignment:
| Q |
22 |
catgccacaaaattcattgaaacataactcaatgcatcaattattattattaattgtaacaaacacataatcaagaaaatttgagggnnnnnnnnnnnnn |
121 |
Q |
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| T |
43212020 |
catgccacgaaattcattgaaacataactcaatgcatcaattattattattaattgtaacaaacacataatcaagaaaatttgagggaaaaaagaaaaaa |
43211921 |
T |
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| Q |
122 |
nnn---cctggccattatattatctactattccaagatgtctcctgcttctgcatattatattttctttcttgctgagtttcttgttctaaagtattcgt |
218 |
Q |
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| T |
43211920 |
aaaaaacctggccattgtattatctactattccaagatgtctcctgcttctgcatattatattttctttcttgctgagtttcttgttctaaagtattcgt |
43211821 |
T |
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| Q |
219 |
ccttttatggatccgtgatctcattccttattttgcacagg |
259 |
Q |
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| T |
43211820 |
ccttttatggatccgtgacctcattccttattttgcacagg |
43211780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 43226648 - 43226599
Alignment:
| Q |
38 |
ttgaaacataactcaatgcatcaattattattattaattgtaacaaacaca |
88 |
Q |
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| T |
43226648 |
ttgaagcataactcaatgcatcaattattgtt-gtaattgtaacaaacaca |
43226599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 25928919 - 25928870
Alignment:
| Q |
38 |
ttgaaacataactcaatgcatcaattattattattaattgtaacaaacaca |
88 |
Q |
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| T |
25928919 |
ttgaaacataacttaatgcatcaattattgtt-gtaattgtaacaaacaca |
25928870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 218 - 259
Target Start/End: Complemental strand, 25928785 - 25928744
Alignment:
| Q |
218 |
tccttttatggatccgtgatctcattccttattttgcacagg |
259 |
Q |
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| T |
25928785 |
tccttttatggatccatgatatcattccttattttgtacagg |
25928744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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