View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19084_high_55 (Length: 247)
Name: NF19084_high_55
Description: NF19084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19084_high_55 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 32645123 - 32644881
Alignment:
| Q |
1 |
gattataggctctatgctcctctttacacggtttgttaatccgttaattagtttctcattcacaagcttagttagnnnnnnnttcaaataattttcttaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
32645123 |
gattataggctctatgctcctctttacacggtttgttaatccgttaattagtttctcattcacaagcttagttagaaaaaaattcaaataattttcttaa |
32645024 |
T |
|
| Q |
101 |
tcagtttcttaatttattatatagggaatagttagttcaggaattgcatactatgttcaagggctggtgatgcaaatgagaggcccagtttttgcaacag |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32645023 |
tcagtttcttaatttat---atagggaatagttagttcaggaattgcatactatgttcaagggctggtgatgcaaatgagaggcccagtttttgcaacag |
32644927 |
T |
|
| Q |
201 |
cttttaatcctctttgcatgatcatcgttgcttgtctgtgctcctt |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
32644926 |
cttttaatcctctttgcatgatcatcgttgcttgtttgggctcctt |
32644881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University