View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19084_high_61 (Length: 237)
Name: NF19084_high_61
Description: NF19084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19084_high_61 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 7088905 - 7089125
Alignment:
| Q |
1 |
gaagaaaggtaagatgaagggtcttggaggtctgatttgaacacaattaaaccgaggacgtcgtcgtttaactgaatcgttacgtcgttgtttgcaaaac |
100 |
Q |
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| T |
7088905 |
gaagaaaggtaagatgaagggtcttggaggtctgatttgaacacaattaaaccgaggacgtcgtcgtttaactgaatcgttacgtcgttgtttgcaaaac |
7089004 |
T |
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| Q |
101 |
aagttaggaaattggtaaatgagatcagaaatgttgtgaaaagtgtcaagtgaaaagttttcattcttgttctttgagggtgaatgctgttgctatgttt |
200 |
Q |
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| T |
7089005 |
aagttaggaaattggtaaatgagatcagaaatgttgtgaaaagtgtcaagtgaaaagttttcattcttgttctttgagggtgaatgctgttgctatg-tt |
7089103 |
T |
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| Q |
201 |
ggtagtttgttatgactatggt |
222 |
Q |
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| T |
7089104 |
ggtagtttgttatgactatggt |
7089125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 11 - 153
Target Start/End: Original strand, 7076091 - 7076235
Alignment:
| Q |
11 |
aagatgaagggtcttggaggtctgatttgaacacaattaaaccgaggacgtcgtcgtttaactgaatcgttacgtcgttgtttgcaaaacaagttaggaa |
110 |
Q |
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||||| |||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
7076091 |
aagataaagggttatgaaggtctgatttgaacacaattaagccgaggacgtcgtcgtttaactgaatggttacgtccttgtttgcaaaacaagttaggaa |
7076190 |
T |
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| Q |
111 |
attggtaaatgagat--cagaaatgttgtgaaaagtgtcaagtga |
153 |
Q |
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| T |
7076191 |
accgataagtgagataaaaaaaatgttgtgaaaagtgtcgagtga |
7076235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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