View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19084_high_62 (Length: 237)
Name: NF19084_high_62
Description: NF19084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19084_high_62 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 4753441 - 4753205
Alignment:
| Q |
1 |
atgaaatcctcaaacctaatatgcaaatatgtctttaaaatctcaaaaaatcgaacccttgcttagaatggaaaatgagctttgttagaaaatccttggt |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4753441 |
atgaaatcctcaagcctaatatgcaaatatgtctttaaaatctcaaaaaatcgaacccttgcttagaatggaaaatgagctttattagaaaatccttggt |
4753342 |
T |
|
| Q |
101 |
cgattaaacctgccacgatgctcataggtcgtagcgtgatccttcacttgtcttacgtgtcacgaggcatcaatgtaaaatcgtgccataatgtagaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4753341 |
cgattaaacctgccacgatgctcataggtcgtagcgtgatccttcacttgtcttacgtgtcacgaggcatcaatgtaaaatcgtgccataatgtagaaaa |
4753242 |
T |
|
| Q |
201 |
atcgtgtcacgatcagtttcaaaatttcaatctcttc |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4753241 |
atcgtgtcacgatcagtttcaaaatttcaatctcttc |
4753205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 226
Target Start/End: Complemental strand, 4742022 - 4741917
Alignment:
| Q |
121 |
ctcataggtcgtagcgtgatccttcacttgtcttacgtgtcacgaggcatcaatgtaaaatcgtgccataatgtagaaaaatcgtgtcacgatcagtttc |
220 |
Q |
| |
|
||||||| |||| ||||||| ||||||||||||| ||| | || ||||||||||| || |||||| ||||||| || || |||||||||| |||||| |
|
|
| T |
4742022 |
ctcatagatcgtggcgtgatacttcacttgtcttttatgttaggaaacatcaatgtaacattgtgccacaatgtagcaatattgtgtcacgattagtttc |
4741923 |
T |
|
| Q |
221 |
aaaatt |
226 |
Q |
| |
|
| |||| |
|
|
| T |
4741922 |
agaatt |
4741917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University