View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19084_high_69 (Length: 218)

Name: NF19084_high_69
Description: NF19084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19084_high_69
NF19084_high_69
[»] chr7 (4 HSPs)
chr7 (65-161)||(6557835-6557933)
chr7 (73-165)||(31345420-31345514)
chr7 (99-165)||(4101464-4101530)
chr7 (108-165)||(11472817-11472874)
[»] chr8 (6 HSPs)
chr8 (65-165)||(5793466-5793568)
chr8 (97-165)||(17108291-17108359)
chr8 (105-165)||(29918530-29918590)
chr8 (103-165)||(6388610-6388672)
chr8 (96-165)||(36274957-36275025)
chr8 (101-165)||(17084214-17084278)
[»] chr2 (8 HSPs)
chr2 (99-165)||(13531867-13531933)
chr2 (105-165)||(30696848-30696908)
chr2 (106-165)||(17845497-17845556)
chr2 (105-165)||(25210301-25210361)
chr2 (117-150)||(31600888-31600921)
chr2 (73-165)||(29656840-29656934)
chr2 (96-165)||(34214762-34214830)
chr2 (117-150)||(40359280-40359313)
[»] chr6 (4 HSPs)
chr6 (65-163)||(10925550-10925650)
chr6 (117-165)||(34179113-34179162)
chr6 (85-148)||(34346136-34346201)
chr6 (96-149)||(9402503-9402556)
[»] chr4 (15 HSPs)
chr4 (96-165)||(4741321-4741390)
chr4 (86-165)||(7334291-7334370)
chr4 (96-165)||(25265253-25265321)
chr4 (105-150)||(36919052-36919097)
chr4 (106-165)||(37384203-37384262)
chr4 (117-165)||(12075737-12075785)
chr4 (103-163)||(21714083-21714143)
chr4 (117-165)||(35304623-35304670)
chr4 (105-153)||(39086085-39086133)
chr4 (106-165)||(33516178-33516237)
chr4 (117-163)||(9280997-9281043)
chr4 (96-165)||(12505636-12505705)
chr4 (96-165)||(19549015-19549084)
chr4 (117-150)||(42907828-42907861)
chr4 (120-165)||(50376457-50376502)
[»] chr1 (14 HSPs)
chr1 (117-165)||(2581509-2581556)
chr1 (97-165)||(5283698-5283766)
chr1 (101-165)||(16903435-16903499)
chr1 (117-165)||(23719539-23719587)
chr1 (96-165)||(36421681-36421750)
chr1 (125-165)||(5293515-5293555)
chr1 (107-163)||(8880374-8880430)
chr1 (73-161)||(13692534-13692624)
chr1 (96-163)||(39219173-39219240)
chr1 (96-163)||(42729051-42729118)
chr1 (96-163)||(47644966-47645033)
chr1 (120-150)||(48125803-48125833)
chr1 (120-165)||(43513134-43513179)
chr1 (117-165)||(33293625-33293673)
[»] chr3 (3 HSPs)
chr3 (96-163)||(37032205-37032272)
chr3 (117-165)||(40890282-40890329)
chr3 (96-165)||(772899-772967)
[»] chr5 (8 HSPs)
chr5 (73-150)||(27900522-27900599)
chr5 (101-165)||(12457436-12457500)
chr5 (117-165)||(16311399-16311446)
chr5 (117-165)||(29664906-29664954)
chr5 (117-165)||(35584052-35584099)
chr5 (65-152)||(12709389-12709478)
chr5 (117-165)||(38972857-38972905)
chr5 (117-165)||(39887207-39887255)
[»] scaffold0157 (1 HSPs)
scaffold0157 (96-165)||(14772-14841)
[»] scaffold0244 (1 HSPs)
scaffold0244 (85-150)||(4700-4767)


Alignment Details
Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 65 - 161
Target Start/End: Complemental strand, 6557933 - 6557835
Alignment:
Q  65 acttagagaagtaagtgtcgtctaaaagactga--ctttgattgtgtgagtgccatgatttagagtttgagtttctatttatataaaaaggataataaa 161  Q
    |||||||||||| |||||| ||| |||||||||  |||||||||||||||||  ||||||||||||||||| |||||||| ||| ||||||||||||||    
T  6557933 acttagagaagtgagtgtcatctgaaagactgagactttgattgtgtgagtgaaatgatttagagtttgagattctatttctatgaaaaggataataaa 6557835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 73 - 165
Target Start/End: Original strand, 31345420 - 31345514
Alignment:
Q  73 aagtaagtgtcgtctaaaagactga--ctttgattgtgtgagtgccatgatttagagtttgagtttctatttatataaaaaggataataaattga 165  Q
    |||| |||||| |||||| ||||||  |||||||||||||||||  ||||| ||||||||||||||||||||||||||||| | || ||||||||    
T  31345420 aagtgagtgtcatctaaatgactgagactttgattgtgtgagtgaaatgatatagagtttgagtttctatttatataaaaatggtagtaaattga 31345514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 165
Target Start/End: Original strand, 4101464 - 4101530
Alignment:
Q  99 tttgattgtgtgagtgccatgatttagagtttgagtttctatttatataaaaaggataataaattga 165  Q
    ||||||||||||||||  |||||| || |||||||||| |||||| ||||||  | |||||||||||    
T  4101464 tttgattgtgtgagtgaaatgattaagggtttgagtttttatttaaataaaattggtaataaattga 4101530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 108 - 165
Target Start/End: Complemental strand, 11472874 - 11472817
Alignment:
Q  108 gtgagtgccatgatttagagtttgagtttctatttatataaaaaggataataaattga 165  Q
    |||||||  ||||||||| ||||  |||||||||||||||||| | ||||||||||||    
T  11472874 gtgagtgaaatgatttagggttttggtttctatttatataaaaggtataataaattga 11472817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 5e-21; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 65 - 165
Target Start/End: Original strand, 5793466 - 5793568
Alignment:
Q  65 acttagagaagtaagtgtcgtctaaaagact--gactttgattgtgtgagtgccatgatttagagtttgagtttctatttatataaaaaggataataaat 162  Q
    ||||| |||||| |||||||||  |||||||  ||||||| |||||||||||  ||||||||| ||||||||||||||||||||||||| |||||| |||    
T  5793466 acttaaagaagtgagtgtcgtcagaaagacttagactttggttgtgtgagtgaaatgatttagggtttgagtttctatttatataaaaatgataattaat 5793565  T
Q  163 tga 165  Q
    |||    
T  5793566 tga 5793568  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 97 - 165
Target Start/End: Original strand, 17108291 - 17108359
Alignment:
Q  97 actttgattgtgtgagtgccatgatttagagtttgagtttctatttatataaaaaggataataaattga 165  Q
    ||||||||||||||||||  || |||||| |||| ||||||||||||||||||| ||||||||||||||    
T  17108291 actttgattgtgtgagtgaaattatttagggtttaagtttctatttatataaaatggataataaattga 17108359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 105 - 165
Target Start/End: Original strand, 29918530 - 29918590
Alignment:
Q  105 tgtgtgagtgccatgatttagagtttgagtttctatttatataaaaaggataataaattga 165  Q
    ||||||||||  ||||||||| ||||||||||||||||||||||||  | |||||||||||    
T  29918530 tgtgtgagtgaaatgatttagggtttgagtttctatttatataaaagaggtaataaattga 29918590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 165
Target Start/End: Complemental strand, 6388672 - 6388610
Alignment:
Q  103 attgtgtgagtgccatgatttagagtttgagtttctatttatataaaaaggataataaattga 165  Q
    ||||||||||||  ||||||||| ||||| |||||| ||||||||||| || |||||||||||    
T  6388672 attgtgtgagtgaaatgatttagggtttgggtttctgtttatataaaatgggtaataaattga 6388610  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 36274957 - 36275025
Alignment:
Q  96 gactttgattgtgtgagtgccatgatttagagtttgagtttctatttatataaaaaggataataaattga 165  Q
    |||||||| ||||||||||  ||||||||| ||| | |||||||||||||||||| ||||| ||||||||    
T  36274957 gactttgactgtgtgagtgaaatgatttagggttgg-gtttctatttatataaaagggatagtaaattga 36275025  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 165
Target Start/End: Complemental strand, 17084278 - 17084214
Alignment:
Q  101 tgattgtgtgagtgccatgatttagagtttgagtttctatttatataaaaaggataataaattga 165  Q
    |||||||||||| |  || |||||| | ||| |||| ||||||||||||||||| ||||||||||    
T  17084278 tgattgtgtgaggggaataatttagggcttgggtttatatttatataaaaaggacaataaattga 17084214  T

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Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 99 - 165
Target Start/End: Original strand, 13531867 - 13531933
Alignment:
Q  99 tttgattgtgtgagtgccatgatttagagtttgagtttctatttatataaaaaggataataaattga 165  Q
    ||||||||||||||||  ||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  13531867 tttgattgtgtgagtgaaatgatttagggtttgagtttctatttatataaaatggataataaattga 13531933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 165
Target Start/End: Original strand, 30696848 - 30696908
Alignment:
Q  105 tgtgtgagtgccatgatttagagtttgagtttctatttatataaaaaggataataaattga 165  Q
    |||||||||| |||||||||| |||||| ||||||||||||||||| || |||||||||||    
T  30696848 tgtgtgagtgacatgatttagggtttgaatttctatttatataaaatgggtaataaattga 30696908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 106 - 165
Target Start/End: Complemental strand, 17845556 - 17845497
Alignment:
Q  106 gtgtgagtgccatgatttagagtttgagtttctatttatataaaaaggataataaattga 165  Q
    |||||||||  |||||||||  || |||||||||||||||||||||||||||||||||||    
T  17845556 gtgtgagtgaaatgatttaggtttggagtttctatttatataaaaaggataataaattga 17845497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 105 - 165
Target Start/End: Original strand, 25210301 - 25210361
Alignment:
Q  105 tgtgtgagtgccatgatttagagtttgagtttctatttatataaaaaggataataaattga 165  Q
    ||||||||||  ||||||||| |||||||||||||||||||||||| || ||| |||||||    
T  25210301 tgtgtgagtgaaatgatttagggtttgagtttctatttatataaaatgggtaacaaattga 25210361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 150
Target Start/End: Complemental strand, 31600921 - 31600888
Alignment:
Q  117 atgatttagagtttgagtttctatttatataaaa 150  Q
    ||||||||||||||||||||||||||||||||||    
T  31600921 atgatttagagtttgagtttctatttatataaaa 31600888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 165
Target Start/End: Complemental strand, 29656934 - 29656840
Alignment:
Q  73 aagtaagtgtcgtctaaaagactga--ctttgattgtgtgagtgccatgatttagagtttgagtttctatttatataaaaaggataataaattga 165  Q
    |||| |||||| ||| |||||||||  |||||| |||||||||   ||||||||| |||   |||| ||||||||||||| ||||||||||||||    
T  29656934 aagtcagtgtcatctgaaagactgagactttgactgtgtgagtcaaatgatttagggttatggtttttatttatataaaagggataataaattga 29656840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 165
Target Start/End: Complemental strand, 34214830 - 34214762
Alignment:
Q  96 gactttgattgtgtgagtgccatgatttagagtttgagtttctatttatataaaaaggataataaattga 165  Q
    |||| ||| ||||| ||||  ||||||||||||| ||||||||||||||||||| |||  ||||||||||    
T  34214830 gactctgactgtgttagtgaaatgatttagagtt-gagtttctatttatataaacagggcaataaattga 34214762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 117 - 150
Target Start/End: Original strand, 40359280 - 40359313
Alignment:
Q  117 atgatttagagtttgagtttctatttatataaaa 150  Q
    |||||||||| |||||||||||||||||||||||    
T  40359280 atgatttagactttgagtttctatttatataaaa 40359313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 65 - 163
Target Start/End: Complemental strand, 10925650 - 10925550
Alignment:
Q  65 acttagagaagtaagtgtcgtctaaaagactga--ctttgattgtgtgagtgccatgatttagagtttgagtttctatttatataaaaaggataataaat 162  Q
    |||||||||||| |||||||| | ||||||| |  |||||||||||| ||||  ||||||||| |||| || |||||||||||||||| | |||||||||    
T  10925650 acttagagaagtgagtgtcgtttgaaagactaaaactttgattgtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaat 10925551  T
Q  163 t 163  Q
    |    
T  10925550 t 10925550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 34179162 - 34179113
Alignment:
Q  117 atgatttagagtttgagtttctatttatataaaaag-gataataaattga 165  Q
    ||||||||| |||||||||||||||||||||||||| | |||||||||||    
T  34179162 atgatttagggtttgagtttctatttatataaaaagaggtaataaattga 34179113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 148
Target Start/End: Complemental strand, 34346201 - 34346136
Alignment:
Q  85 tctaaaagactga--ctttgattgtgtgagtgccatgatttagagtttgagtttctatttatataa 148  Q
    |||||||||||||  || ||| ||||||||||  ||||||||| ||||| ||||||||||||||||    
T  34346201 tctaaaagactgagactctgactgtgtgagtgaaatgatttagggtttgggtttctatttatataa 34346136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 149
Target Start/End: Original strand, 9402503 - 9402556
Alignment:
Q  96 gactttgattgtgtgagtgccatgatttagagtttgagtttctatttatataaa 149  Q
    |||| ||| ||||||||||  ||||||||| ||||| |||||||||||||||||    
T  9402503 gactctgactgtgtgagtgaaatgatttagggtttgggtttctatttatataaa 9402556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 96 - 165
Target Start/End: Complemental strand, 4741390 - 4741321
Alignment:
Q  96 gactttgattgtgtgagtgccatgatttagagtttgagtttctatttatataaaaaggataataaattga 165  Q
    |||| |||||||||||| |  | ||||||| |||||||||||||||||||||||| ||||||||||||||    
T  4741390 gactatgattgtgtgagaggaacgatttagggtttgagtttctatttatataaaatggataataaattga 4741321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 86 - 165
Target Start/End: Complemental strand, 7334370 - 7334291
Alignment:
Q  86 ctaaaagactga--ctttgattgtgtgagtgccatgatttagagtttgagtttctatttatataaaaaggataataaattga 165  Q
    ||||||||||||  |||| | ||||||||||  |||||||||||||||||||||||||  |||||||| |||||||||||||    
T  7334370 ctaaaagactgagactttaactgtgtgagtgaaatgatttagagtttgagtttctatt--tataaaaacgataataaattga 7334291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 165
Target Start/End: Complemental strand, 25265321 - 25265253
Alignment:
Q  96 gactttgattgtgtgagtgccatgatttagagtttgagtttctatttatataaaaaggataataaattga 165  Q
    |||| |||||||||||||   |||||||||| ||||||||||||||||||| | ||||||||||||||||    
T  25265321 gactctgattgtgtgagtaaaatgatttagaatttgagtttctatttatat-agaaggataataaattga 25265253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 36919052 - 36919097
Alignment:
Q  105 tgtgtgagtgccatgatttagagtttgagtttctatttatataaaa 150  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||    
T  36919052 tgtgtgagtgaaatgatttagagtttgagtttctatttatataaaa 36919097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 165
Target Start/End: Original strand, 37384203 - 37384262
Alignment:
Q  106 gtgtgagtgccatgatttagagtttgagtttctatttatataaaaaggataataaattga 165  Q
    |||||||||  ||||||||| ||||||  |||||||||||||||| ||||||||||||||    
T  37384203 gtgtgagtgaaatgatttagggtttgaacttctatttatataaaagggataataaattga 37384262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 12075785 - 12075737
Alignment:
Q  117 atgatttagagtttgagtttctatttatataaaaaggataataaattga 165  Q
    |||||| ||||||| ||||||||||||||||||| || |||||||||||    
T  12075785 atgattcagagttttagtttctatttatataaaatgggtaataaattga 12075737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 163
Target Start/End: Complemental strand, 21714143 - 21714083
Alignment:
Q  103 attgtgtgagtgccatgatttagagtttgagtttctatttatataaaaaggataataaatt 163  Q
    ||||||| ||||  ||||||||| ||||||||||||||||||||||||  | |||||||||    
T  21714143 attgtgtaagtgaaatgatttagggtttgagtttctatttatataaaagaggtaataaatt 21714083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 35304670 - 35304623
Alignment:
Q  117 atgatttagagtttgagtttctatttatataaaaaggataataaattga 165  Q
    |||||||||||||||||||||| ||||||| |||||| |||||||||||    
T  35304670 atgatttagagtttgagtttctttttatat-aaaagggtaataaattga 35304623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 153
Target Start/End: Original strand, 39086085 - 39086133
Alignment:
Q  105 tgtgtgagtgccatgatttagagtttgagtttctatttatataaaaagg 153  Q
    ||||||||||  ||||||||| |||| ||||||||||||||||||||||    
T  39086085 tgtgtgagtgaaatgatttagggtttaagtttctatttatataaaaagg 39086133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 165
Target Start/End: Complemental strand, 33516237 - 33516178
Alignment:
Q  106 gtgtgagtgccatgatttagagtttgagtttctatttatataaaaaggataataaattga 165  Q
    |||||||||  ||||||||| |||||||||| ||||||||||||| || ||||| |||||    
T  33516237 gtgtgagtgaaatgatttagggtttgagtttttatttatataaaaggggtaatacattga 33516178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 163
Target Start/End: Complemental strand, 9281043 - 9280997
Alignment:
Q  117 atgatttagagtttgagtttctatttatataaaaaggataataaatt 163  Q
    ||||||||| |||||| ||||||| ||||||||| ||||||||||||    
T  9281043 atgatttagggtttgaatttctatctatataaaagggataataaatt 9280997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 165
Target Start/End: Complemental strand, 12505705 - 12505636
Alignment:
Q  96 gactttgattgtgtgagtgccatgatttagagtttgagtttctatttatataaaaaggataataaattga 165  Q
    ||||||||||||| || ||  ||||||||  |||| ||||||||||||||||||| ||  ||||||||||    
T  12505705 gactttgattgtgcgaatgaaatgatttaatgtttaagtttctatttatataaaaggggaaataaattga 12505636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 165
Target Start/End: Complemental strand, 19549084 - 19549015
Alignment:
Q  96 gactttgattgtgtgagtgccatgatttagagtttgagtttctatttatataaaaaggataataaattga 165  Q
    ||||||||| |||| ||||  ||||||||  |||||||||| | ||||||||||| ||||||| ||||||    
T  19549084 gactttgatcgtgtcagtgaaatgatttaaggtttgagtttttgtttatataaaatggataatgaattga 19549015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 117 - 150
Target Start/End: Original strand, 42907828 - 42907861
Alignment:
Q  117 atgatttagagtttgagtttctatttatataaaa 150  Q
    ||||||||| ||||||||||||||||||||||||    
T  42907828 atgatttagggtttgagtttctatttatataaaa 42907861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 120 - 165
Target Start/End: Complemental strand, 50376502 - 50376457
Alignment:
Q  120 atttagagtttgagtttctatttatataaaaaggataataaattga 165  Q
    |||||| |||| ||||||||||||||||||| ||| ||||||||||    
T  50376502 atttagcgttttagtttctatttatataaaatggaaaataaattga 50376457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 2581509 - 2581556
Alignment:
Q  117 atgatttagagtttgagtttctatttatataaaaaggataataaattga 165  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  2581509 atgatttagagtttgagtttctatttatat-aaaaggatattaaattga 2581556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 97 - 165
Target Start/End: Complemental strand, 5283766 - 5283698
Alignment:
Q  97 actttgattgtgtgagtgccatgatttagagtttgagtttctatttatataaaaaggataataaattga 165  Q
    |||||||||||||||| |  |||||||| |||||||||| ||||||||| |||| |||| |||||||||    
T  5283766 actttgattgtgtgagagaaatgatttaaagtttgagttcctatttatacaaaagggatgataaattga 5283698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 16903435 - 16903499
Alignment:
Q  101 tgattgtgtgagtgccatgatttagagtttgagtttctatttatataaaaaggataataaattga 165  Q
    ||||||||||||||  || |||||| |||||||||| ||||||||||||||||  ||||||||||    
T  16903435 tgattgtgtgagtgaaataatttagggtttgagtttatatttatataaaaagggcaataaattga 16903499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 23719539 - 23719587
Alignment:
Q  117 atgatttagagtttgagtttctatttatataaaaaggataataaattga 165  Q
    |||||||| |||||||||||||||||||||||||||| || ||||||||    
T  23719539 atgatttatagtttgagtttctatttatataaaaagggtagtaaattga 23719587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 36421681 - 36421750
Alignment:
Q  96 gactttgattgtgtgagtgccatgatttagagtttgagtttctatttatataaaaaggataataaattga 165  Q
    |||| ||| ||||||| ||  ||||||||||||| |||||| ||||||||||| | ||||||||||||||    
T  36421681 gactctgactgtgtgaatgaaatgatttagagttcgagtttttatttatataagagggataataaattga 36421750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 165
Target Start/End: Complemental strand, 5293555 - 5293515
Alignment:
Q  125 gagtttgagtttctatttatataaaaaggataataaattga 165  Q
    ||||||||||||||||||||||||||  |||||||||||||    
T  5293555 gagtttgagtttctatttatataaaagtgataataaattga 5293515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 8880374 - 8880430
Alignment:
Q  107 tgtgagtgccatgatttagagtttgagtttctatttatataaaaaggataataaatt 163  Q
    ||||||||  |||||||| |||||||||||||||||||| |||| || |||||||||    
T  8880374 tgtgagtgaaatgatttaaagtttgagtttctatttataaaaaaggggtaataaatt 8880430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 161
Target Start/End: Original strand, 13692534 - 13692624
Alignment:
Q  73 aagtaagtgtcgtctaaaagact--gactttgattgtgtgagtgccatgatttagagtttgagtttctatttatataaaaaggataataaa 161  Q
    |||| |||||||||| ||||| |  |||| | |||||||| |||  ||||||||| ||||  |||||||||||||||||| ||||||||||    
T  13692534 aagtgagtgtcgtctgaaagagtaagactctaattgtgtgggtgaaatgatttagggttttggtttctatttatataaaagggataataaa 13692624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 163
Target Start/End: Original strand, 39219173 - 39219240
Alignment:
Q  96 gactttgattgtgtgagtgccatgatttagagtttgagtttctatttatataaaaaggataataaatt 163  Q
    |||| ||| |||||||| |  ||||||||| ||||||||||||||||||||||||  | |||||||||    
T  39219173 gactgtgactgtgtgagcgaaatgatttagggtttgagtttctatttatataaaagaggtaataaatt 39219240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 163
Target Start/End: Complemental strand, 42729118 - 42729051
Alignment:
Q  96 gactttgattgtgtgagtgccatgatttagagtttgagtttctatttatataaaaaggataataaatt 163  Q
    |||| ||| ||||||||||  ||||||||| || | ||||||||||||||||||| |||| |||||||    
T  42729118 gactctgactgtgtgagtgaaatgatttagtgtataagtttctatttatataaaagggatgataaatt 42729051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 163
Target Start/End: Complemental strand, 47645033 - 47644966
Alignment:
Q  96 gactttgattgtgtgagtgccatgatttagagtttgagtttctatttatataaaaaggataataaatt 163  Q
    |||| |||| ||| |||||  |||||||||  | ||||||||||||||||||||| ||||||||||||    
T  47645033 gactatgatcgtgggagtgaaatgatttaggatctgagtttctatttatataaaagggataataaatt 47644966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 150
Target Start/End: Complemental strand, 48125833 - 48125803
Alignment:
Q  120 atttagagtttgagtttctatttatataaaa 150  Q
    |||||||||||||||||||||||||||||||    
T  48125833 atttagagtttgagtttctatttatataaaa 48125803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 120 - 165
Target Start/End: Complemental strand, 43513179 - 43513134
Alignment:
Q  120 atttagagtttgagtttctatttatataaaaaggataataaattga 165  Q
    |||||| ||||||||||||||||||||||||||  | |||||||||    
T  43513179 atttagggtttgagtttctatttatataaaaagagttataaattga 43513134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 33293673 - 33293625
Alignment:
Q  117 atgatttagagtttgagtttctatttatataaaaaggataataaattga 165  Q
    ||||||||| ||||||||||||||| |||||||| || || ||||||||    
T  33293673 atgatttagggtttgagtttctattgatataaaatgggtactaaattga 33293625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 163
Target Start/End: Complemental strand, 37032272 - 37032205
Alignment:
Q  96 gactttgattgtgtgagtgccatgatttagagtttgagtttctatttatataaaaaggataataaatt 163  Q
    |||| ||||||| ||||||  ||||||||| |||||||||| ||||||||||||| || |||||||||    
T  37032272 gactctgattgtatgagtgaaatgatttagggtttgagtttttatttatataaaatgggtaataaatt 37032205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 40890282 - 40890329
Alignment:
Q  117 atgatttagagtttgagtttctatttatataaaaaggataataaattga 165  Q
    ||||| |||||||||||||||||||||||| | ||||||||||||||||    
T  40890282 atgatctagagtttgagtttctatttatat-agaaggataataaattga 40890329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 165
Target Start/End: Complemental strand, 772967 - 772899
Alignment:
Q  96 gactttgattgtgtgagtgccatgatttagagtttgagtttctatttatataaaaaggataataaattga 165  Q
    ||||| |||||||||||||  |||||| |  |||||||||||||||||||  |||||| |||||||||||    
T  772967 gacttagattgtgtgagtgaaatgattcaaggtttgagtttctatttata-caaaagggtaataaattga 772899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 150
Target Start/End: Complemental strand, 27900599 - 27900522
Alignment:
Q  73 aagtaagtgtcgtctaaaagactgactttgattgtgtgagtgccatgatttagagtttgagtttctatttatataaaa 150  Q
    |||| |||||| ||| ||||||||| | ||| ||||||| ||  ||||||||| |||| |||||||||||||||||||    
T  27900599 aagtgagtgtcatctgaaagactgattctgaatgtgtgactgaaatgatttagggtttcagtttctatttatataaaa 27900522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 12457436 - 12457500
Alignment:
Q  101 tgattgtgtgagtgccatgatttagagtttgagtttctatttatataaaaaggataataaattga 165  Q
    ||||||||||||||  |||||||||| |||  |||||||||||||| ||| || |||||||||||    
T  12457436 tgattgtgtgagtgaaatgatttagactttaggtttctatttatattaaaggggtaataaattga 12457500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 16311446 - 16311399
Alignment:
Q  117 atgatttagagtttgagtttctatttatataaaaaggataataaattga 165  Q
    ||||||||| ||||| |||||||||||||||||| ||||||||||||||    
T  16311446 atgatttagggtttg-gtttctatttatataaaagggataataaattga 16311399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 29664906 - 29664954
Alignment:
Q  117 atgatttagagtttgagtttctatttatataaaaaggataataaattga 165  Q
    ||||||||||||||||||||||||||| |||||| || || ||||||||    
T  29664906 atgatttagagtttgagtttctatttaaataaaaggggtagtaaattga 29664954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 35584052 - 35584099
Alignment:
Q  117 atgatttagagtttgagtttctatttatataaaaaggataataaattga 165  Q
    ||||||||| |||||||||||||||||||| |||||| |||||||||||    
T  35584052 atgatttagggtttgagtttctatttatat-aaaagggtaataaattga 35584099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 152
Target Start/End: Original strand, 12709389 - 12709478
Alignment:
Q  65 acttagagaagtaagtgtcgtctaaaagactga--ctttgattgtgtgagtgccatgatttagagtttgagtttctatttatataaaaag 152  Q
    ||||| |||||| |||||||| | |||||||||  ||||| ||||  |||||  ||||||||| |||||| ||||||||||| |||||||    
T  12709389 acttaaagaagtgagtgtcgtttgaaagactgagactttggttgtacgagtgaaatgatttagggtttgaatttctatttatgtaaaaag 12709478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 38972857 - 38972905
Alignment:
Q  117 atgatttagagtttgagtttctatttatataaaaaggataataaattga 165  Q
    ||||||||| |||| |||||| |||||||||||| || |||||||||||    
T  38972857 atgatttagggtttcagtttcgatttatataaaagggttaataaattga 38972905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 39887255 - 39887207
Alignment:
Q  117 atgatttagagtttgagtttctatttatataaaaaggataataaattga 165  Q
    |||||||||| || ||||||||||||||||||||  || ||||||||||    
T  39887255 atgatttagatttcgagtttctatttatataaaagagagaataaattga 39887207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 14772 - 14841
Alignment:
Q  96 gactttgattgtgtgagtgccatgatttagagtttgagtttctatttatataaaaaggataataaattga 165  Q
    ||||||||||||| || ||  ||||||||  |||| ||||||||||||||||||| ||  ||||||||||    
T  14772 gactttgattgtgcgaatgaaatgatttaatgtttaagtttctatttatataaaaggggaaataaattga 14841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0244 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 4767 - 4700
Alignment:
Q  85 tctaaaagac--tgactttgattgtgtgagtgccatgatttagagtttgagtttctatttatataaaa 150  Q
    ||||||||||  ||||| ||| ||||||||||  ||||||||||||||   |||||||||||||||||    
T  4767 tctaaaagaccgtgactctgactgtgtgagtgaaatgatttagagttttgatttctatttatataaaa 4700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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