View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19084_high_73 (Length: 212)
Name: NF19084_high_73
Description: NF19084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19084_high_73 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 16 - 194
Target Start/End: Complemental strand, 31276163 - 31275985
Alignment:
| Q |
16 |
attattctccaccttaagaaacccaaacaccttattccatgagcttctttgatactgcatttggtactgccgaattttcgcagtgtgttttttgatccaa |
115 |
Q |
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| T |
31276163 |
attattctccaccttaagaaacccaaacaccttattccatgagcttctttgatactgcatttggtactgccgaattttcgcagtgtgttttttgatccaa |
31276064 |
T |
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| Q |
116 |
tcatctcccaaaagtgtccctaattcactatcttcagctttttgaacaatgtacctgcaattgttcatcaagaaaacat |
194 |
Q |
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| T |
31276063 |
tcatctcccaaaagtgtccctaattcactatcttcagctttttgaacaatgtacctgcaattgttcatcaagaaaacat |
31275985 |
T |
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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 194
Target Start/End: Original strand, 31277977 - 31278034
Alignment:
| Q |
137 |
aattcactatcttcagctttttgaacaatgtacctgcaattgttcatcaagaaaacat |
194 |
Q |
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| T |
31277977 |
aattcactatctttggttttttgaaccatgtacctgcagttattcatcaagaaaacat |
31278034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 21 - 185
Target Start/End: Complemental strand, 26909585 - 26909421
Alignment:
| Q |
21 |
tctccaccttaagaaacccaaacaccttattccatgagcttctttgatactgcatttggtactgccgaattttcgcagtgtgttttttgatccaatcatc |
120 |
Q |
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| T |
26909585 |
tctccaccttcagaaaccccaacaacttgttccatgagcttctttgatagtttgtatggcattgccgcacttttgtactgtgttttctgatccaatcatc |
26909486 |
T |
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| Q |
121 |
tcccaaaagtgtccctaattcactatcttcagctttttgaacaatgtacctgcaattgttcatca |
185 |
Q |
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| T |
26909485 |
acccataagtgttcctaattcactgtctttggtcttctgaacaatgtatctcccattgttcatca |
26909421 |
T |
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