View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19084_high_74 (Length: 206)

Name: NF19084_high_74
Description: NF19084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19084_high_74
NF19084_high_74
[»] chr4 (10 HSPs)
chr4 (12-187)||(4333529-4333704)
chr4 (26-187)||(4126287-4126448)
chr4 (26-187)||(4358401-4358562)
chr4 (12-187)||(4322952-4323127)
chr4 (26-187)||(4342933-4343094)
chr4 (26-187)||(4351222-4351381)
chr4 (26-83)||(4330480-4330537)
chr4 (121-173)||(6811805-6811857)
chr4 (119-164)||(6626874-6626919)
chr4 (137-173)||(6535503-6535539)
[»] chr6 (13 HSPs)
chr6 (18-185)||(5356468-5356635)
chr6 (26-157)||(5133785-5133916)
chr6 (18-174)||(5348394-5348550)
chr6 (26-152)||(5075616-5075742)
chr6 (100-174)||(5094106-5094180)
chr6 (26-152)||(5431398-5431524)
chr6 (25-157)||(5262023-5262155)
chr6 (100-174)||(5159364-5159438)
chr6 (46-152)||(5691996-5692102)
chr6 (102-175)||(5285985-5286058)
chr6 (18-187)||(5423736-5423905)
chr6 (54-170)||(5341713-5341829)
chr6 (91-170)||(5104739-5104818)


Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 12 - 187
Target Start/End: Original strand, 4333529 - 4333704
Alignment:
Q  12 tggtcgagtgaatctacaagaacaacttatgtatgatattttcaaagaaaccacatccaagatacaaaacatagaagcaggaaaatatatattaaaggac 111  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4333529 tggtcaagtgaatctacaagaacaacttatgtatgatattttcaaagaaaccacatccaagatacaaaacatagaagcaggaaaatatatattaaaggac 4333628  T
Q  112 agactatgtcataaaagagttcttattgtacttgacgatgttaataaattggaccaactaaatattctgtgtggaa 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4333629 agactatgtcataaaagagttcttattgtacttgacgatgttaataaattggaccaactaaatattctgtgtggaa 4333704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 26 - 187
Target Start/End: Complemental strand, 4126448 - 4126287
Alignment:
Q  26 tacaagaacaacttatgtatgatattttcaaagaaaccacatccaagatacaaaacatagaagcaggaaaatatatattaaaggacagactatgtcataa 125  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| || ||| |||| |||| ||||||||||||  |||| ||||||||    
T  4126448 tacaagaacaacttatgtatgatattttcaaagaaaccacaaccaagattcaaaatattgaatcagggaaatctatattaaaggaacgactttgtcataa 4126349  T
Q  126 aagagttcttattgtacttgacgatgttaataaattggaccaactaaatattctgtgtggaa 187  Q
    |||||||||| |||||||||||||||| ||||||||||||||||| |||  | |||||||||    
T  4126348 aagagttcttcttgtacttgacgatgtgaataaattggaccaactcaatgctttgtgtggaa 4126287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 26 - 187
Target Start/End: Original strand, 4358401 - 4358562
Alignment:
Q  26 tacaagaacaacttatgtatgatattttcaaagaaaccacatccaagatacaaaacatagaagcaggaaaatatatattaaaggacagactatgtcataa 125  Q
    ||||||||| ||||||| |||||||||| ||||| |||||| |||||||||||| ||| ||| ||||||||| |||||||||||| ||||| ||||||||    
T  4358401 tacaagaacgacttatgaatgatattttgaaagacaccacaaccaagatacaaagcattgaatcaggaaaatctatattaaaggaaagactgtgtcataa 4358500  T
Q  126 aagagttcttattgtacttgacgatgttaataaattggaccaactaaatattctgtgtggaa 187  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||  | |||||||||    
T  4358501 aagagtacttattgtacttgacgatgtcaataaattggaccaactaaatgctttgtgtggaa 4358562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 12 - 187
Target Start/End: Complemental strand, 4323127 - 4322952
Alignment:
Q  12 tggtcgagtgaatctacaagaacaacttatgtatgatattttcaaagaaaccacatccaagatacaaaacatagaagcaggaaaatatatattaaaggac 111  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||| | ||| |||||| || ||||||||| |      
T  4323127 tggtcaagtgaatctacaagaacaacttatgtatgatatttttaaagaaaccacaaccaagatacagaacgttgaatcaggaatatctatattaaatgga 4323028  T
Q  112 agactatgtcataaaagagttcttattgtacttgacgatgttaataaattggaccaactaaatattctgtgtggaa 187  Q
    ||||| |||||||||||||| ||| |||||||||||||||| |||||| ||||||| ||||||  | |||||||||    
T  4323027 agactctgtcataaaagagtacttcttgtacttgacgatgtgaataaactggaccagctaaatgctttgtgtggaa 4322952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 26 - 187
Target Start/End: Original strand, 4342933 - 4343094
Alignment:
Q  26 tacaagaacaacttatgtatgatattttcaaagaaaccacatccaagatacaaaacatagaagcaggaaaatatatattaaaggacagactatgtcataa 125  Q
    ||||||||||||||||| ||||||||||||||||||| ||  |||||||||||||||| |||   | ||||  |||||||||||| || || ||||||||    
T  4342933 tacaagaacaacttatgcatgatattttcaaagaaacaactaccaagatacaaaacattgaattggaaaaacctatattaaaggaaaggctctgtcataa 4343032  T
Q  126 aagagttcttattgtacttgacgatgttaataaattggaccaactaaatattctgtgtggaa 187  Q
    |||||||||| |||||||||||||||| ||||||||||| |||||||||  | |||||||||    
T  4343033 aagagttcttcttgtacttgacgatgtgaataaattggatcaactaaatgctttgtgtggaa 4343094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 26 - 187
Target Start/End: Original strand, 4351222 - 4351381
Alignment:
Q  26 tacaagaacaacttatgtatgatattttcaaagaaaccacatccaagatacaaaacatagaagcaggaaaatatatattaaaggacagactatgtcataa 125  Q
    ||||| ||||||||||  ||||||||||||||||||| ||| | |||||||||||||| ||  | ||||||| |||||||||||| ||||| ||||||      
T  4351222 tacaaaaacaacttatagatgatattttcaaagaaacaacaacaaagatacaaaacattgagtcgggaaaatctatattaaaggaaagactctgtcat-- 4351319  T
Q  126 aagagttcttattgtacttgacgatgttaataaattggaccaactaaatattctgtgtggaa 187  Q
    |||||||||  |||||||||||||||| ||||||||||||||||| |||| | |||||||||    
T  4351320 aagagttctccttgtacttgacgatgtgaataaattggaccaacttaatactttgtgtggaa 4351381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 4330480 - 4330537
Alignment:
Q  26 tacaagaacaacttatgtatgatattttcaaagaaaccacatccaagatacaaaacat 83  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  4330480 tacaagaacaacttatgtatgatattttcaaagaaatcacaaccaagatacaaaacat 4330537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 6811805 - 6811857
Alignment:
Q  121 cataaaagagttcttattgtacttgacgatgttaataaattggaccaactaaa 173  Q
    |||||||| || ||| |||||||||||||||||||||||||||| || |||||    
T  6811805 cataaaagggtacttcttgtacttgacgatgttaataaattggagcagctaaa 6811857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 164
Target Start/End: Complemental strand, 6626919 - 6626874
Alignment:
Q  119 gtcataaaagagttcttattgtacttgacgatgttaataaattgga 164  Q
    |||||||||| || ||| || |||||||||||||||||||||||||    
T  6626919 gtcataaaagtgtacttcttatacttgacgatgttaataaattgga 6626874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 6535539 - 6535503
Alignment:
Q  137 ttgtacttgacgatgttaataaattggaccaactaaa 173  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  6535539 ttgtacttgatgatgttaatgaattggaccaactaaa 6535503  T

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Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 5356635 - 5356468
Alignment:
Q  18 agtgaatctacaagaacaacttatgtatgatattttcaaagaaaccacatccaagatacaaaacatagaagcaggaaaatatatattaaaggacagacta 117  Q
    ||||||| |||||||||||||| | | |||||| | |||||| || ||| |||| ||||||| ||| |||   ||||||   ||||||||||| |||||     
T  5356635 agtgaatttacaagaacaacttctctctgatatctgcaaagacacgacaaccaaaatacaaagcattgaaaatggaaaaatcatattaaaggatagactt 5356536  T
Q  118 tgtcataaaagagttcttattgtacttgacgatgttaataaattggaccaactaaatattctgtgtgg 185  Q
    |||||||||||||| || ||||||||||| ||||||||||  ||||||||||| ||| || |||||||    
T  5356535 tgtcataaaagagtactaattgtacttgatgatgttaatactttggaccaactgaatgttttgtgtgg 5356468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 26 - 157
Target Start/End: Complemental strand, 5133916 - 5133785
Alignment:
Q  26 tacaagaacaacttatgtatgatattttcaaagaaaccacatccaagatacaaaacatagaagcaggaaaatatatattaaaggacagactatgtcataa 125  Q
    |||||||||||||| ||| ||||||   ||||||||  ||| | |||||||||||||| ||  |||||||| |||| |||||||| ||||| || |||||    
T  5133916 tacaagaacaacttctgtttgatatcaacaaagaaatgacaactaagatacaaaacattgagtcaggaaaaaatattttaaaggatagactctggcataa 5133817  T
Q  126 aagagttcttattgtacttgacgatgttaata 157  Q
    ||||||  | ||||||||||| ||||| ||||    
T  5133816 aagagtattaattgtacttgatgatgtaaata 5133785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 5348394 - 5348550
Alignment:
Q  18 agtgaatctacaagaacaacttatgtatgatattttcaaagaaaccacatccaagatacaaaacatagaagcaggaaaatatatattaaaggacagacta 117  Q
    ||||||| ||||| |||||||| ||| ||| || | |||||| |  ||| |||| ||||||| ||| |||   ||||||   ||||||||||| |||||     
T  5348394 agtgaatttacaaaaacaacttctgtttgacatctgcaaagatatgacaaccaatatacaaagcattgaaagcggaaaaatcatattaaaggatagactc 5348493  T
Q  118 tgtcataaaagagttcttattgtacttgacgatgttaataaattggaccaactaaat 174  Q
    || ||||||||||| || ||||| ||||| |||||||||| |||||||||| |||||    
T  5348494 tgccataaaagagtactaattgttcttgatgatgttaatacattggaccaattaaat 5348550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 152
Target Start/End: Complemental strand, 5075742 - 5075616
Alignment:
Q  26 tacaagaacaacttatgtatgatattttcaaagaaaccacatccaagatacaaaacatagaagcaggaaaatatatattaaaggacagactatgtcataa 125  Q
    |||||||||||||| | | |||||||| |||||| || | | | ||||||| ||  || ||  | ||||||  |||||||| ||| ||||||||||||||    
T  5075742 tacaagaacaacttctttttgatatttgcaaagatacgaaaactaagatacgaagtattgagtcgggaaaaactatattaatggatagactatgtcataa 5075643  T
Q  126 aagagttcttattgtacttgacgatgt 152  Q
    |||| |||||||||||||||| |||||    
T  5075642 aagaattcttattgtacttgatgatgt 5075616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 100 - 174
Target Start/End: Original strand, 5094106 - 5094180
Alignment:
Q  100 atattaaaggacagactatgtcataaaagagttcttattgtacttgacgatgttaataaattggaccaactaaat 174  Q
    ||||||||||| ||||| || | ||||||||| || ||| ||||||| |||||||||| ||||||||||||||||    
T  5094106 atattaaaggatagactctgccgtaaaagagtactaattttacttgatgatgttaatacattggaccaactaaat 5094180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 152
Target Start/End: Original strand, 5431398 - 5431524
Alignment:
Q  26 tacaagaacaacttatgtatgatattttcaaagaaaccacatccaagatacaaaacatagaagcaggaaaatatatattaaaggacagactatgtcataa 125  Q
    |||||||||||||| | | |||||| |||| || ||| ||  ||||||||||||  || ||  | || |||  ||||||||||||||| || ||||||||    
T  5431398 tacaagaacaacttctatctgatatcttcagaggaacgacgaccaagatacaaagtattgattctgggaaaattatattaaaggacaggctttgtcataa 5431497  T
Q  126 aagagttcttattgtacttgacgatgt 152  Q
    |||| | ||||||||||||||||||||    
T  5431498 aagaatacttattgtacttgacgatgt 5431524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 157
Target Start/End: Complemental strand, 5262155 - 5262023
Alignment:
Q  25 ctacaagaacaacttatgtatgatattttcaaagaaaccacatccaagatacaaaacatagaagcaggaaaatatatattaaaggacagactatgtcata 124  Q
    ||||||||||||||| | | ||||||||  |||||||  |||  ||| |||  |||||| ||   ||||||| | ||||||||||||| ||| || ||||    
T  5262155 ctacaagaacaacttttatttgatatttgtaaagaaagaacaatcaaaatatcaaacattgagttaggaaaaaacatattaaaggacaaactttgccata 5262056  T
Q  125 aaagagttcttattgtacttgacgatgttaata 157  Q
    ||||||| |||||||||||||| ||||| ||||    
T  5262055 aaagagtacttattgtacttgatgatgtgaata 5262023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 100 - 174
Target Start/End: Complemental strand, 5159438 - 5159364
Alignment:
Q  100 atattaaaggacagactatgtcataaaagagttcttattgtacttgacgatgttaataaattggaccaactaaat 174  Q
    ||||||||||| ||||| || ||||||||||| || ||| |||| || || ||||||| ||||||||||||||||    
T  5159438 atattaaaggatagactctgccataaaagagtactaattttactcgatgacgttaatacattggaccaactaaat 5159364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 46 - 152
Target Start/End: Complemental strand, 5692102 - 5691996
Alignment:
Q  46 gatattttcaaagaaaccacatccaagatacaaaacatagaagcaggaaaatatatattaaaggacagactatgtcataaaagagttcttattgtacttg 145  Q
    ||||||| ||||||||| ||  |||| ||||||||||| || ||||||||| ||| ||||| ||| ||||| || |||||||  || ||||||||||| |    
T  5692102 gatatttgcaaagaaacaacgaccaatatacaaaacattgatgcaggaaaaaatacattaatggatagactctgccataaaaaggtacttattgtactgg 5692003  T
Q  146 acgatgt 152  Q
    | |||||    
T  5692002 atgatgt 5691996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 175
Target Start/End: Complemental strand, 5286058 - 5285985
Alignment:
Q  102 attaaaggacagactatgtcataaaagagttcttattgtacttgacgatgttaataaattggaccaactaaata 175  Q
    ||||||||||| ||| || ||||||||||| |||||||||||||| ||||| |||| | | |||||||| ||||    
T  5286058 attaaaggacaaactttgccataaaagagtacttattgtacttgatgatgtgaatacactagaccaactgaata 5285985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 5423736 - 5423905
Alignment:
Q  18 agtgaatctacaagaacaacttatgtatgatattttcaaagaaaccacatccaagatacaaaacatagaagcaggaaaatatatattaaaggacagacta 117  Q
    ||||||| |||||||||||||| | | |||||| | |||||| |  ||| |||| ||||||| ||| |||   ||||||  | |||| ||||| |||||     
T  5423736 agtgaatttacaagaacaacttctctttgatatatgcaaagatatgacaaccaaaatacaaagcattgaattcggaaaacttgtattgaaggatagactc 5423835  T
Q  118 tgtcataaaagagttcttattgtacttgacgatgttaataaattggaccaactaaatattctgtgtggaa 187  Q
    || || |||||||| || ||| ||||||| || ||||||| |||||||||||| |||  | |||||||||    
T  5423836 tgccacaaaagagtactaattttacttgatgacgttaatacattggaccaactgaatgctttgtgtggaa 5423905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 170
Target Start/End: Original strand, 5341713 - 5341829
Alignment:
Q  54 caaagaaaccacatccaagatacaaaacatagaagcaggaaaatatatattaaaggacagactatgtcataaaagagttcttattgtacttgacgatgtt 153  Q
    ||||||||| ||| | |||||||||||||| ||  | ||||||  |||||||||||| ||||| |||||||| | | | ||| ||||||| || |||||     
T  5341713 caaagaaacaacaacaaagatacaaaacattgagtcgggaaaagttatattaaaggatagactctgtcataagaaaatacttcttgtactagatgatgtg 5341812  T
Q  154 aataaattggaccaact 170  Q
    |||  ||||||||||||    
T  5341813 aattcattggaccaact 5341829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 91 - 170
Target Start/End: Complemental strand, 5104818 - 5104739
Alignment:
Q  91 ggaaaatatatattaaaggacagactatgtcataaaagagttcttattgtacttgacgatgttaataaattggaccaact 170  Q
    |||||| | ||||||||||| ||||| || |||||||||||  | ||||||||||| |||||||||| | | ||||||||    
T  5104818 ggaaaaaacatattaaaggatagactctgccataaaagagtattgattgtacttgatgatgttaatacacttgaccaact 5104739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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