View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19084_high_9 (Length: 484)
Name: NF19084_high_9
Description: NF19084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19084_high_9 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 15 - 480
Target Start/End: Original strand, 51207616 - 51208089
Alignment:
| Q |
15 |
ccctggaaacctactaccttaacataacagaaaccaaaatagcaataaaagccagccagaagcaattccaaaacacgctagagggcctcccaaacacaac |
114 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
51207616 |
ccctggaaacctgctaccttaacataacagaaaccaaaatagcaataaaagccagccagaagcaactccaaaacacgctagagggcctcccaaacacaac |
51207715 |
T |
|
| Q |
115 |
accaaaccgcaactgcattggcatcacagaaaaactgcaact----------ctgctgttaaacacaacaacacataaaatctattttttcttattcttc |
204 |
Q |
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||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51207716 |
accaaaccgcaactgcagtggcatcacagaaaaactgcaactttgcacaggactgctgttaaacacaacaacacataaaatctattttttcttattcttc |
51207815 |
T |
|
| Q |
205 |
aagttcttattctctgtttgttgtctagcatataaatttccttgagaagcatccatgcttgaccatttctcacattgccgtcatcttatccactaaaaat |
304 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||| ||||| |
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| T |
51207816 |
aagttcttattctctgtttgtt--ctagcatataaatttccttgagaagcatccatgcttgagcatttctcacatggtcgtcatcttatccactgaaaat |
51207913 |
T |
|
| Q |
305 |
tgaacctaaatccacataaattcaaaaagtagttaatagnnnnnnngaatgacattgaatcagtataacaaaaatcaagcattttactccctctatctct |
404 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51207914 |
tgaacctaaatctacataaattcaaaaagtagttaatagtttttttgaatgacattgaatcagtataacaaaaatcaagcattttactccctctatctct |
51208013 |
T |
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| Q |
405 |
aattataaaacttttctaataaaattaggcaacaacaagtacatatattacaactagttagttaattcctctttaa |
480 |
Q |
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| T |
51208014 |
aattataaaacttttttaataaaattaggcaacaacaagtacatatattacaactagctagttaatttctctttaa |
51208089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 43 - 484
Target Start/End: Original strand, 43430057 - 43430519
Alignment:
| Q |
43 |
agaaaccaaaatagcaataaaagccagccagaagcaattccaaaacacgctagagggcctcccaaacacaacaccaaaccgcaactgcattggcatcaca |
142 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||| | |||||||| ||||||||| |
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| T |
43430057 |
agaaaccaaaatagcaataaaagccagccagaagcaactccgaaacacgctagcaagcctcccaaacacaacaccaaatcacaactgcagtggcatcacg |
43430156 |
T |
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| Q |
143 |
gaaaaactgcaactctgc----------tgttaaacacaacaacacataaaatctattttttcttattcttcaagttcttattctctgtttgttgtctag |
232 |
Q |
| |
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| T |
43430157 |
gaaaaactgcaactctgcacaggactgctgtcaaacacagcagcacataaaatctattttttcttattcttcaagttcttattctctgtttgttgtctag |
43430256 |
T |
|
| Q |
233 |
catataaatttccttgagaagcatccatgcttgaccatttctcacattgccgtcatcttatccactaaaaattgaacctaaatccacataaattcaaaaa |
332 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||| |||| |||||||||||||||||||| |||||||||||| |
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| T |
43430257 |
catataaatttccttgagaagcatccatgcttgaccatttcacacattgccatcaccttattcactgaaaattgaacctaaatccacgtaaattcaaaaa |
43430356 |
T |
|
| Q |
333 |
gtagttaatagnnnnnnngaatgacattgaatcagtataa-----------caaaaatcaagcattttactccctctatctctaattataaaacttttct |
421 |
Q |
| |
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||||||||||| |||||| ||| ||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
43430357 |
gtagttaatagtttttttgaatgatatttaatcagtataacaaaaatcaagcaaaaatcaagcattttactccatcaatctctaattataaaacttttct |
43430456 |
T |
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| Q |
422 |
aataaaattaggcaacaacaagtacatatattacaactagttagttaattcctctttaacatt |
484 |
Q |
| |
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| T |
43430457 |
aataaaattaggcatcaacaagtacatatattacaactagttagttaattcctctttaacatt |
43430519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 15 - 484
Target Start/End: Complemental strand, 6256217 - 6255724
Alignment:
| Q |
15 |
ccctggaaacctactaccttaacataacagaaaccaaaatagcaataaaagccagccagaagcaattccaaaacacgctagagggcctcccaaacacaac |
114 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||| | ||||||||||||| |||||||||||||||| |
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| T |
6256217 |
ccctggaaacctgctaccttaacataacagaaaccaaaatagcaataaaagctatccagaagcaacttcaaaacacgctagcaagcctcccaaacacaac |
6256118 |
T |
|
| Q |
115 |
accaaaccgcaactgcattggcatcacagaaaaactgcaactctgc----------tgttaaacacaacaacacataaaatctatttttt---cttattc |
201 |
Q |
| |
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||||||||||||||||| ||||||||| |||||||||||||||||| ||| ||||||| | ||||||||||||||||||| ||||||| |
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| T |
6256117 |
accaaaccgcaactgcagtggcatcactgaaaaactgcaactctgcataggactgttgtcaaacacagtagcacataaaatctatttttttttcttattc |
6256018 |
T |
|
| Q |
202 |
ttcaagttcttattctctgtttgttgtctagcatataaatttccttgagaagcatccatgcttgaccatttctcacattgccgtcatcttatccactaaa |
301 |
Q |
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||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||| | |
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| T |
6256017 |
ttcaagttcgtattctctgtttgttgtctgacatataaatttccttgagaagcatccatgtttgaccatttctcacattgtcatcatcttatccactgga |
6255918 |
T |
|
| Q |
302 |
aattgaacctaaatccacataaattcaaaaagtagttaatagnnnnnnngaatgacattgaatcagtataacaa-----------aaatcaagcatttta |
390 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||| |
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| T |
6255917 |
aattgaacctaaatccacataaattcaaaaagtagttaatattttttttgaatgatattgaatcagtataacaaaaatcaagcagaaatcaagcatttta |
6255818 |
T |
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| Q |
391 |
ctccctctatctctaattataaaacttttctaataaaattaggcaacaacaagtacatatattacaactagttagttaattcctctttaacatt |
484 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
6255817 |
ctccctctatctctaattataaaacctttctaataaaattaggcaacaacaagtacatacattacaactagctagttaattcctctttaacatt |
6255724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 382 - 460
Target Start/End: Original strand, 48074115 - 48074194
Alignment:
| Q |
382 |
agcattttactccctctatctctaattataaaacttttctaataaaattagg-caacaacaagtacatatattacaacta |
460 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
48074115 |
agcattttacttcctctatctctaattataaaacttttctaataaaattaggtaaacaacaagtacatatatttcaacta |
48074194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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