View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19084_low_1 (Length: 758)

Name: NF19084_low_1
Description: NF19084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19084_low_1
NF19084_low_1
[»] chr2 (5 HSPs)
chr2 (18-751)||(13715194-13715925)
chr2 (410-734)||(4848480-4848802)
chr2 (165-321)||(11511160-11511316)
chr2 (180-322)||(7068492-7068635)
chr2 (410-561)||(14659002-14659154)
[»] chr3 (3 HSPs)
chr3 (410-750)||(45907960-45908296)
chr3 (166-336)||(54103189-54103359)
chr3 (195-268)||(40283671-40283744)
[»] chr8 (5 HSPs)
chr8 (584-751)||(22917219-22917379)
chr8 (417-570)||(4784994-4785148)
chr8 (616-751)||(4784136-4784274)
chr8 (409-570)||(22917026-22917186)
chr8 (684-719)||(5320150-5320185)
[»] chr5 (2 HSPs)
chr5 (413-570)||(39773695-39773853)
chr5 (639-733)||(39773556-39773650)
[»] chr6 (2 HSPs)
chr6 (164-335)||(26353346-26353504)
chr6 (219-268)||(19138395-19138444)
[»] chr4 (3 HSPs)
chr4 (410-561)||(6127068-6127220)
chr4 (465-559)||(44398274-44398368)
chr4 (415-550)||(43810833-43810969)
[»] chr1 (1 HSPs)
chr1 (173-267)||(36686618-36686712)
[»] chr7 (1 HSPs)
chr7 (195-268)||(23015165-23015238)


Alignment Details
Target: chr2 (Bit Score: 581; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 18 - 751
Target Start/End: Complemental strand, 13715925 - 13715194
Alignment:
Q  18 acaacaaagtggttttaggctataactgtgtttacgggtgcttacttacattagtgattttaatcattacttgatatgatgtaatatggtagaaagtgag 117  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13715925 acaacaaagtggttttaggctataactctgtttacgggtgcttacttacattagtgattttaatcattacttgatatgatgtaatatggtagaaagtgag 13715826  T
Q  118 gcaaaaacgttgcaaacaatgttggtgtactgttcttagttattctaagcatgtttttgggatagagtttagaataccaaaagcatggctggcgtggtta 217  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13715825 gcaaaaacgttgcaaacaatgttagtgtacggttcttagttattctaagcatgtttttggcatagagtttagaataccaaaagcatggctggcgtggtta 13715726  T
Q  218 ccaaagcaaatctgccgtgactttattaagctaccatttggagcttttgtgtaaacgtgatacattaccgtagttttctatagaacgtggtttgtcaaag 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||     
T  13715725 ccaaagcaaatctgccgtgactttattaagctaccatttggagcttttgtgtaaacgcgatacattaccgtggttttctatagaacgtggtttgtcaaac 13715626  T
Q  318 gcaatgacaaacatgctataagtctataaaaacctcattgtaaatattattcagcacacatcaaattgaacaaatctttatatatctttttgggtggcat 417  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  13715625 gcaatggcaaacatgctataagtttataaaaacctcattgtaaatattattcaacacacatcaaattgaacaaatctttatatatctttttgggtggcat 13715526  T
Q  418 ttagcttggacgagttgaagaattgg-ccatgatggaccaannnnnnnaatgtttagattagacaatccaccaaatcttatcatactctacccacacctt 516  Q
    ||||||||||||||| |||||| ||| |||||||| |||||       |||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  13715525 ttagcttggacgagtagaagaaatggtccatgatgcaccaatttttttaatgtttagattagacaatccaccaaatcttatcatactctacccacaccct 13715426  T
Q  517 atctaagccatcaccaactctatctccttcattgctctttctctctcttggtacnnnnnnnnnnnnnatatcaatactattcaacaactcccctacagta 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||||   |    
T  13715425 atctaagccatcaccaactctatctccttcattgctctttctctctcttggtacttttttcatttttatatcaatactattcaacaactcccctac---a 13715329  T
Q  617 gttccattgaaatggtgatggtttcaaataagtagtcataccaatatatagctaaatcacataattattatggtcattgattgaaactgatcttaagcac 716  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  13715328 gttccattgaaatggtgatggttttaaataagtagtcataccaatatatagctaaatcacataattattatggtcattgattgaaactgatcttaagtac 13715229  T
Q  717 atacataagaacttttttatagattattcatctca 751  Q
    ||||| |||||||||||||| ||||||||||||||    
T  13715228 atacacaagaacttttttatggattattcatctca 13715194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 410 - 734
Target Start/End: Original strand, 4848480 - 4848802
Alignment:
Q  410 ggtggcatttagcttggacgagttgaagaattggcc-atgatggaccaannnnnnnaatgtttagattagacaatccaccaaatcttatcatactctacc 508  Q
    |||||||||||| |||||| ||||||||||||||   |||||||| |||       |||||||||||||| ||||||| |||||||||||||||||||||    
T  4848480 ggtggcatttagtttggactagttgaagaattggtgtatgatggatcaatttttttaatgtttagattaggcaatccatcaaatcttatcatactctacc 4848579  T
Q  509 cacaccttatctaagccatcaccaactctatctccttcattgctctttctctctcttggtacnnnnnnnnnnnnnatatcaatactattcaacaactccc 608  Q
    || ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||             ||||||||| |||||||||||||||    
T  4848580 cagactctatctaagccatcaccaactctatctccttcattgctctttctctctcttggtactttttttatttttatatcaatattattcaacaactccc 4848679  T
Q  609 ctacagtagttccattgaaatggtgatggtttcaaataagtagtcataccaatatatagctaaatcacataattattatggtcattgattgaaactgatc 708  Q
    || |||| |   |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4848680 ctgcagttg---cattgaaatggtgatggtttcaaataagcagtcataccaatatatagctaaatcacataattattatggtcattgattgaaactgatc 4848776  T
Q  709 ttaagcacatacataagaactttttt 734  Q
    ||||||||||||| ||||||||||||    
T  4848777 ttaagcacatacacaagaactttttt 4848802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 165 - 321
Target Start/End: Complemental strand, 11511316 - 11511160
Alignment:
Q  165 agcatgtttttgggatagagtttagaataccaaaagcatggctggcgtggttaccaaagcaaatctgccgtgactttattaagctaccatttggagcttt 264  Q
    ||||||| |||||  ||||||||| || |||||||||| ||||||| || ||| ||||||||| ||||||||| |||||||||||| |||||||||||||    
T  11511316 agcatgtgtttggtgtagagtttacaacaccaaaagcacggctggcatgattatcaaagcaaaactgccgtgattttattaagctagcatttggagcttt 11511217  T
Q  265 tgtgtaaacgtgatacattaccgtagttttctatagaacgtggtttgtcaaaggcaa 321  Q
    || |  ||||||||| ||| |||| |||||| ||| || |||||||| |||| ||||    
T  11511216 tgcgccaacgtgataaattgccgtggttttccataaaatgtggtttgacaaacgcaa 11511160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 180 - 322
Target Start/End: Complemental strand, 7068635 - 7068492
Alignment:
Q  180 tagagtttagaataccaaaagcatggctggcgtggttaccaaagcaaatctgccgtgactttattaagct-accatttggagcttttgtgtaaacgtgat 278  Q
    ||||||||| || |||||||||| || ||  ||| ||| ||||||||| |||  |||||||||||||||| | ||||| |||||||||||  ||||||||    
T  7068635 tagagtttacaacaccaaaagcacggttgatgtgattatcaaagcaaaactgttgtgactttattaagcttaacatttagagcttttgtgccaacgtgat 7068536  T
Q  279 acattaccgtagttttctatagaacgtggtttgtcaaaggcaat 322  Q
      ||||||||||||||||||| ||||||||||| |||| |||||    
T  7068535 gaattaccgtagttttctataaaacgtggtttgacaaacgcaat 7068492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 410 - 561
Target Start/End: Original strand, 14659002 - 14659154
Alignment:
Q  410 ggtggcatttagcttggacgagttgaagaattgg-ccatgatggaccaannnnnnnaatgtttagattagacaatccaccaaatcttatcatactctacc 508  Q
    |||| |||||||||||||  | |||||||||||| |||||||||| |||       |||||||||||||||| |||||  |||||||||||||||||| |    
T  14659002 ggtgccatttagcttggatcaattgaagaattggtccatgatggatcaatttttttaatgtttagattagactatccatgaaatcttatcatactctatc 14659101  T
Q  509 cacaccttatctaagccatcaccaactctatctccttcattgctctttctctc 561  Q
    |||||   |||| |||||||| |||||||||||| ||||||| ||| ||||||    
T  14659102 cacactaaatcttagccatcatcaactctatctctttcattgttctctctctc 14659154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 410 - 750
Target Start/End: Complemental strand, 45908296 - 45907960
Alignment:
Q  410 ggtggcatttagcttggacgagttgaagaattgg-ccatgatggaccaannnnnnnaatgtttagattagacaatccaccaaatcttatcatactctacc 508  Q
    ||||| ||||||||||||| ||||||| |||| | ||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  45908296 ggtggtatttagcttggaccagttgaaaaatttgtccatgatggaccaatttttttaatgtttagattagacaatccaccaaatcttatcatactctacc 45908197  T
Q  509 cacaccttatctaagccatcaccaactctatctccttcattgctctttctctctcttggtacnnnnnnnnnnnnnatatcaatactattcaacaactccc 608  Q
    |||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||             |||||||||||||||||||||||||    
T  45908196 cacaccctatctaagccatcaccaactctatc--cttcattgctctttctctctcttggtacttttttcatttttatatcaatactattcaacaactccc 45908099  T
Q  609 ctacagtagttccattgaaatggtgatggtttcaaataagtagtcataccaatatatagctaaatcacataattattatggtcattgattgaaactgatc 708  Q
    || ||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45908098 ctgcagt---tccattgaaatggtgatggtttcaaataagtagtcataccaatatatagctaaatcacataattattatggtcattgattgaaactgatc 45908002  T
Q  709 ttaagcacatacataagaacttttttatagattattcatctc 750  Q
    |||||||||| || |||||||||||||| |||||||| ||||    
T  45908001 ttaagcacattcacaagaacttttttatggattattcctctc 45907960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 166 - 336
Target Start/End: Original strand, 54103189 - 54103359
Alignment:
Q  166 gcatgtttttgggatagagtttagaataccaaaagcatggctggcgtggttaccaaagcaaatctgccgtgactttattaagctaccatttggagctttt 265  Q
    |||||| ||||| |||||||||| || |||||||||| ||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  54103189 gcatgtgtttggtatagagtttacaacaccaaaagcacggctgacgtggttatcaaagcaaaactgccgtgactttattaagctaccatttggagctttt 54103288  T
Q  266 gtgtaaacgtgatacattaccgtagttttctatagaacgtggtttgtcaaaggcaatgacaaacatgctat 336  Q
    | |  ||||||||||||| |||| |||||||||| ||||||||||| |||| |||||| ||||||||||||    
T  54103289 gcgccaacgtgatacattgccgttgttttctataaaacgtggtttgacaaacgcaatggcaaacatgctat 54103359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 268
Target Start/End: Complemental strand, 40283744 - 40283671
Alignment:
Q  195 caaaagcatggctggcgtggttaccaaagcaaatctgccgtgactttattaagctaccatttggagcttttgtg 268  Q
    |||||||| |||| ||||| ||| ||||||||| ||  ||||||||||| |||||| | |||||||||||||||    
T  40283744 caaaagcacggcttgcgtgattatcaaagcaaaactatcgtgactttatgaagctagcctttggagcttttgtg 40283671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 121; Significance: 1e-61; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 584 - 751
Target Start/End: Original strand, 22917219 - 22917379
Alignment:
Q  584 atatcaatactattcaacaactcccctacagtagttccattgaaatggtgatggtttcaaataagtagtcataccaatatatagctaaatcacataatta 683  Q
    ||||||||||||||||||||||||| |   ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22917219 atatcaatactattcaacaactcccat---gtagttccattgaaagggtgatggtttcaaataagtagtcataccaatatatagctaaatcacataatta 22917315  T
Q  684 ttatggtcattgattgaaactgatcttaagcacatacataagaacttttttatagattattcatctca 751  Q
    |||||||||||||||||||||||||||||||    |||||||||||||||||| |||||||| |||||    
T  22917316 ttatggtcattgattgaaactgatcttaagc----acataagaacttttttatggattattcctctca 22917379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 417 - 570
Target Start/End: Complemental strand, 4785148 - 4784994
Alignment:
Q  417 tttagcttggacgagttgaagaattgg-ccatgatggaccaannnnnnnaatgtttagattagacaatccaccaaatcttatcatactctacccacacct 515  Q
    |||||||||||| |||||||||||||| ||||||||||||||       ||||| |||||||||||||||||||||||||||||||||||||||||||      
T  4785148 tttagcttggaccagttgaagaattggtccatgatggaccaatttttttaatgtgtagattagacaatccaccaaatcttatcatactctacccacactc 4785049  T
Q  516 tatctaagccatcaccaactctatctccttcattgctctttctctctcttggtac 570  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4785048 tatctaagccatcaccaactctatctccttcattgctctttctctctcttggtac 4784994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 616 - 751
Target Start/End: Complemental strand, 4784274 - 4784136
Alignment:
Q  616 agttccattgaaatggtgatggtttcaaataagta---gtcataccaatatatagctaaatcacataattattatggtcattgattgaaactgatcttaa 712  Q
    ||||||||||||||||||||||||||||| |||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4784274 agttccattgaaatggtgatggtttcaaacaagtactagtcataccaatatatagctaaatcacataattattatggtcattgattgaaactgatcttaa 4784175  T
Q  713 gcacatacataagaacttttttatagattattcatctca 751  Q
    |||||||||  ||||||||||||| |||||||| |||||    
T  4784174 gcacatacacgagaacttttttatggattattcctctca 4784136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 409 - 570
Target Start/End: Original strand, 22917026 - 22917186
Alignment:
Q  409 gggtggcatttagcttggacgagttgaagaattggccatgatggaccaannnnnnnaatgtttagattagacaatccaccaaatcttat-------cata 501  Q
    |||||||||||||||||||| ||||||||||||||        ||||||       |||||||||||||||||||||||||||||||||       ||||    
T  22917026 gggtggcatttagcttggaccagttgaagaattgg--------gaccaatttttttaatgtttagattagacaatccaccaaatcttatcagttatcata 22917117  T
Q  502 ctctacccacaccttatctaagccatcaccaactctatctccttcattgctctttctctctcttggtac 570  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  22917118 ctctacccacaccctatctaagccatcaccaactctatctccttccttgctctttctctctcttggtac 22917186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 684 - 719
Target Start/End: Complemental strand, 5320185 - 5320150
Alignment:
Q  684 ttatggtcattgattgaaactgatcttaagcacata 719  Q
    |||||||||||||||||||||||||| |||||||||    
T  5320185 ttatggtcattgattgaaactgatctcaagcacata 5320150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 110; Significance: 5e-55; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 413 - 570
Target Start/End: Complemental strand, 39773853 - 39773695
Alignment:
Q  413 ggcatttagcttggacgagttgaagaattgg-ccatgatggaccaannnnnnnaatgtttagattagacaatccaccaaatcttatcatactctacccac 511  Q
    |||||||||||||||| |||||||||||||| ||||||||| ||||       ||||||||||||||||||||||||||||| |||||||||||||||||    
T  39773853 ggcatttagcttggaccagttgaagaattggtccatgatgggccaatttttttaatgtttagattagacaatccaccaaatcatatcatactctacccac 39773754  T
Q  512 accttatctaagccatcaccaactctatctccttcattgctctttctctctcttggtac 570  Q
    ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  39773753 accctatctaagccatcaccaactctatctccttcattgctctttttctctcttggtac 39773695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 639 - 733
Target Start/End: Complemental strand, 39773650 - 39773556
Alignment:
Q  639 ttcaaataagtagtcataccaatatatagctaaatcacataattattatggtcattgattgaaactgatcttaagcacatacataagaacttttt 733  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  39773650 ttcaaataagtagtcataccaatatatagctaaatcacataattattatggtcattgattgaaactgatcttaagcacatacacaagaacttttt 39773556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 7e-42; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 164 - 335
Target Start/End: Complemental strand, 26353504 - 26353346
Alignment:
Q  164 aagcatgtttttgggatagagtttagaataccaaaagcatggctggcgtggttaccaaagcaaatctgccgtgactttattaagctaccatttggagctt 263  Q
    |||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||                 
T  26353504 aagcatgtgtttggcatagagtttagaataccaaaagcacggctggcgtggttaccaaagcaaatctgtcgtgactttattaagcta------------- 26353418  T
Q  264 ttgtgtaaacgtgatacattaccgtagttttctatagaacgtggtttgtcaaaggcaatgacaaacatgcta 335  Q
     ||| ||||| ||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  26353417 atgtctaaacctgatatattaccgtggttttctatagaacgtggtttgtcaaacgcaatgacaaacatgcta 26353346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 19138395 - 19138444
Alignment:
Q  219 caaagcaaatctgccgtgactttattaagctaccatttggagcttttgtg 268  Q
    ||||||||| ||||||||| |||||||||||| |||||| ||||||||||    
T  19138395 caaagcaaaactgccgtgattttattaagctagcatttgaagcttttgtg 19138444  T

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Target: chr4 (Bit Score: 56; Significance: 8e-23; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 410 - 561
Target Start/End: Original strand, 6127068 - 6127220
Alignment:
Q  410 ggtggcatttagcttggacgagttgaagaattgg-ccatgatggaccaannnnnnnaatgtttagattagacaatccaccaaatcttatcatactctacc 508  Q
    |||| |||||||||| ||  | |||||||||||| ||||||||||||||       |||||||||||||||| ||||| |||||||||||||| |||| |    
T  6127068 ggtgtcatttagcttagatcaattgaagaattggtccatgatggaccaatttttttaatgtttagattagactatccatcaaatcttatcatattctatc 6127167  T
Q  509 cacaccttatctaagccatcaccaactctatctccttcattgctctttctctc 561  Q
    |||||   |||| |||||||| |||||||||||| ||||||| ||| ||||||    
T  6127168 cacactaaatcttagccatcatcaactctatctctttcattgttctctctctc 6127220  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 465 - 559
Target Start/End: Original strand, 44398274 - 44398368
Alignment:
Q  465 aatgtttagattagacaatccaccaaatcttatcatactctacccacaccttatctaagccatcaccaactctatctccttcattgctctttctc 559  Q
    |||||||||||||||| ||||| ||||||||||||||||||| ||||||   |||| |||||| |||||||||||||| ||||||| ||| ||||    
T  44398274 aatgtttagattagactatccatcaaatcttatcatactctatccacactaaatcttagccattaccaactctatctctttcattgttctctctc 44398368  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 415 - 550
Target Start/End: Original strand, 43810833 - 43810969
Alignment:
Q  415 catttagcttggacgagttgaagaattggcc-atgatggaccaannnnnnnaatgtttagattagacaatccaccaaatcttatcatactctacccacac 513  Q
    |||||||||||||| | ||||| ||||||   ||||||||||||       ||| |||||||||||| ||||| |||||||||||  |||||| ||||||    
T  43810833 catttagcttggaccaattgaataattggtttatgatggaccaatttttttaatatttagattagactatccatcaaatcttatcgaactctatccacac 43810932  T
Q  514 cttatctaagccatcaccaactctatctccttcattg 550  Q
       |||| ||||||||||||||||||||| |||||||    
T  43810933 taaatcttagccatcaccaactctatctctttcattg 43810969  T

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Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 267
Target Start/End: Complemental strand, 36686712 - 36686618
Alignment:
Q  173 tttgggatagagtttagaataccaaaagcatggctggcgtggttaccaaagcaaatctgccgtgactttattaagctaccatttggagcttttgt 267  Q
    ||||| |||||||||| ||| |||||||||||| ||||||| ||| ||||||||| || |  ||||||||| |||||| | ||| ||||||||||    
T  36686712 tttggtatagagtttacaatcccaaaagcatggttggcgtgattatcaaagcaaaactacaatgactttatgaagctaacctttagagcttttgt 36686618  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 268
Target Start/End: Original strand, 23015165 - 23015238
Alignment:
Q  195 caaaagcatggctggcgtggttaccaaagcaaatctgccgtgactttattaagctaccatttggagcttttgtg 268  Q
    |||||| | |||||||||| ||| ||||||||| || |  ||||||||| |||||| | |||||||||||||||    
T  23015165 caaaagtacggctggcgtgattatcaaagcaaaactacaatgactttatgaagctagcctttggagcttttgtg 23015238  T

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