View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19084_low_12 (Length: 473)
Name: NF19084_low_12
Description: NF19084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19084_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 28 - 459
Target Start/End: Original strand, 28408159 - 28408590
Alignment:
| Q |
28 |
aaatatcaatcccaccgaaatggtggaataacccatagtgaaggtggcatccttgtgaaccaatattggtaacggcaatgttgactaaagcctccatctt |
127 |
Q |
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| T |
28408159 |
aaatatcaatcccaccgaaatggtggaataacccatagtgaaggtggcatccttgtgaaccaatgttggtaacggcaatgttgactaaagcctccatctt |
28408258 |
T |
|
| Q |
128 |
tcacattaaagattttcatatcaaatggtccattagggtaagaaattggatcctcttcgtaaaaatcatctgtgtaataaattgaatccttttgtagata |
227 |
Q |
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| T |
28408259 |
tcacattaaagattttcatatcaaacggtccattagggtaagaaattggatcctcttcgtaaaaatcatctgtgtaataaattgaatccttttgtagata |
28408358 |
T |
|
| Q |
228 |
attagcaaaatacgaagccgacatagatatagaatcactatcacccaaaaataaaacattgtcacccaaactatcaagtcttaacatacgtataagctta |
327 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
28408359 |
attagcaaaatacgaagccgacatagatatagaatcactatcacccaaaaataaaacattgtctcccaaactatcaagtcttaacatatgtataagctta |
28408458 |
T |
|
| Q |
328 |
ccacttttaagatccaattccaacttatacacttcaaatctttcggtaccacaactaggcgggttaatatcttcatcaatgtcatcatctccataaccaa |
427 |
Q |
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| T |
28408459 |
ccacttttaagatccaattccaacttatacacttcaaatctttcggtaccacaactaggcgggttaatatcttcatcaatgtcatcatctccataaccaa |
28408558 |
T |
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| Q |
428 |
taaattttctaacaagccacaaatctccctcc |
459 |
Q |
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| T |
28408559 |
taaattttctaacaagccacaagtctccctcc |
28408590 |
T |
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Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 31 - 218
Target Start/End: Original strand, 8466769 - 8466956
Alignment:
| Q |
31 |
tatcaatcccaccgaaatggtggaataacccatagtgaaggtggcatccttgtgaaccaatattggtaacggcaatgttgactaaagcctccatctttca |
130 |
Q |
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||||| |||||| || ||||||||| |||||||||||||||||||||| || |||||||| || | || ||||||| | |||||||| ||||||||| | |
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| T |
8466769 |
tatcattcccactgatatggtggaagaacccatagtgaaggtggcatctgtgcgaaccaatgttcgaaagggcaatggtcactaaagcttccatctttta |
8466868 |
T |
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| Q |
131 |
cattaaagattttcatatcaaatggtccattagggtaagaaattggatcctcttcgtaaaaatcatctgtgtaataaattgaatcctt |
218 |
Q |
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| T |
8466869 |
cattataggttttcatatcaaatggtccattagggtaaggatgcagtgcttcttcaaaataatcatcggtgtaataaattgaatcctt |
8466956 |
T |
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