View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19084_low_14 (Length: 457)
Name: NF19084_low_14
Description: NF19084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19084_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 10 - 441
Target Start/End: Complemental strand, 2794164 - 2793733
Alignment:
| Q |
10 |
catcatcatcttcattctcttcaaattccactgcaacaccgtcaaaagaatcaaaaccaccctcaacatcctcaaactccagaaaatcagttataacctt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
2794164 |
catcatcatcttcattctcttcaaattccactgcaacaccgtcaaaagaatcaaaaccaccctccacatcctcaaactccagaaaatcagttataagctt |
2794065 |
T |
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| Q |
110 |
tccaatcgaaacaaggtgattaaacacagtatcagtgatagggttaagcagtttctcaatgttaatcttcttgtcaccaatagagtcgtttttcagaatg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2794064 |
tccaatcgaaacaaggtgattaaacacagtatcagtgatagggttaagcagtttctcaatgttaatcttcttgtcaccaacagagtcgtttttcagaatg |
2793965 |
T |
|
| Q |
210 |
gaaagaatctcatcagcagcacctctgataatcccaagcggctgaccaccaaaccgctgctggattacactcaacatcgcctcataagcagcacgagttt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2793964 |
gaaagaatctcatcagcagcacctctgataatcccaagcggctgaccaccaaaccgctgctggattacactcaacatcgcctcataagcagcacgagttt |
2793865 |
T |
|
| Q |
310 |
ccttcgtctttggctcgtaaacaccgtcatcaatggcattgagtacactctggctttcgctctgaagacgacgctgtttgttccgacgataacctccgga |
409 |
Q |
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||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2793864 |
ccttcgtctttggctcgtaaacaccgttatcaacggcattgagtacactctggctttcgctctgaagacgacgctgtttgttcctacgataacctccgga |
2793765 |
T |
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| Q |
410 |
gtcagattcatcgattaggtttctcttaggag |
441 |
Q |
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|||| ||||||||||||||||||||||||||| |
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| T |
2793764 |
gtcaaattcatcgattaggtttctcttaggag |
2793733 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 248 - 341
Target Start/End: Complemental strand, 29261349 - 29261256
Alignment:
| Q |
248 |
cggctgaccaccaaaccgctgctggattacactcaacatcgcctcataagcagcacgagtttccttcgtctttggctcgtaaacaccgtcatca |
341 |
Q |
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|||||||||||||| | | ||||| || ||||||||||| || |||||||| || | || ||||||||||| |||| ||||||||||||||| |
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| T |
29261349 |
cggctgaccaccaagctgttgctgaatcacactcaacatagcttcataagctgctcttgtctccttcgtcttcggctgataaacaccgtcatca |
29261256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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