View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19084_low_18 (Length: 446)
Name: NF19084_low_18
Description: NF19084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19084_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 14 - 430
Target Start/End: Complemental strand, 39904712 - 39904298
Alignment:
| Q |
14 |
atgccgagtgttttcctctccatgaccaaaatcaatagagtgtgagtgtggtagtggtttaatcagaaaagtgaattgtataaatatggctcttatatat |
113 |
Q |
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| T |
39904712 |
atgccgagtgttttcctctccatgaccaaaatcaatagagtgtgagtgtggtagtggtttaatcagaaaagtgaattgtataaatatggctcttatatgt |
39904613 |
T |
|
| Q |
114 |
gatgttcttatatataatgaattgcatggaaacatacatatatgacgtgttggagccgcagatacagaagcaggtgagtgttcacagatggtagtaccag |
213 |
Q |
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| T |
39904612 |
gatgttcttatatataatgaattgcatggaaacatacatatatgacgtgttggagccgcagatacagaagcaggtgagtgttcacagatggtagtaccag |
39904513 |
T |
|
| Q |
214 |
tttgatcaaataggttggttaacatgcaaagctgcaacgtgtgtatacgtttctgagctgccaattaacaataaccaccaccatctgttgatgtttcttt |
313 |
Q |
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| T |
39904512 |
tttgatcaaataggttggttaacatgcaaagctgcaacgtgtgaatacgtttctgagctgccaattaacaataaccaccaccatctgttgatgtttcttt |
39904413 |
T |
|
| Q |
314 |
tgcttttaccaccactttcaatttctttaattaccataataaccagtttaaatactatatattgaagatgaggtgtatgagtaagttttgcg--aaagct |
411 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
39904412 |
tgcttttaccaccactttcaatttct----ttaccataataaccagtttaaatactatatattgaagatgaggtgtatgagtaagttttgcgaaaaagct |
39904317 |
T |
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| Q |
412 |
gcatactactacaatcttt |
430 |
Q |
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| T |
39904316 |
gcatactactacaatcttt |
39904298 |
T |
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