View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19084_low_19 (Length: 443)
Name: NF19084_low_19
Description: NF19084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19084_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 17 - 434
Target Start/End: Complemental strand, 25035661 - 25035220
Alignment:
| Q |
17 |
tgatcaatgatcaaacgaaacatatccaattttttgttttagtaagataagtttatacatatgatataatctgcaggttttgtttatagtttttgtattg |
116 |
Q |
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| T |
25035661 |
tgatcaatgatcaaatgaaacatatccaattttttgttttagtaagataagtttatacatatgatataatctgcaggttttgtttatagtttttgtattg |
25035562 |
T |
|
| Q |
117 |
aattatt---gatcaccttctt-----------atgtacctcgcataatggaattaggtagattaatgaatagaacatatatccagacttgtatatgatc |
202 |
Q |
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| T |
25035561 |
aattattattgatcacctttttgaattgagggtatgtacctcgcataatggaattaggtagattaatgaatagaacatatatccagacttgtatacgatc |
25035462 |
T |
|
| Q |
203 |
atagcaccgacacctcggattgaaggagtgtttggtatccggcacgtgtcagtgaccgacattagcacaattggttacattgagtcact----------t |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| | |
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| T |
25035461 |
atagcaccgacacctcggattgaaggagtgtttggtatccggcacgtgtcagtgatcgacattaacacaattggttacattgagtcacttataatttctt |
25035362 |
T |
|
| Q |
293 |
atattattatagatatgttttagtattggtgtcgagtctgatgtccatgtctatgttttgtactaagaaattagtgatatggactttggtttctgctcat |
392 |
Q |
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|||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
25035361 |
atattattatagatatgtttcggtatctgtgtcgagtctgatgtccacgtctatgttttgtactaagaaattagcgatatggactttggcttctgctcat |
25035262 |
T |
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| Q |
393 |
tcaaatgcaatctaggaaacattacataatgcacagaataat |
434 |
Q |
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| T |
25035261 |
tcaaatgcaatctaggaaacattacataatgcacagaataat |
25035220 |
T |
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