View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19084_low_2 (Length: 656)

Name: NF19084_low_2
Description: NF19084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19084_low_2
NF19084_low_2
[»] chr5 (1 HSPs)
chr5 (1-642)||(28146157-28146798)


Alignment Details
Target: chr5 (Bit Score: 597; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 597; E-Value: 0
Query Start/End: Original strand, 1 - 642
Target Start/End: Original strand, 28146157 - 28146798
Alignment:
Q  1 tgttctatcatttacgcaggaaagaatcaaaggaatggttctacttaagaatctcaaccaaattgcaaacattttgaatccagtttctagatccataata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28146157 tgttctatcatttacgcaggaaagaatcaaaggaatggttctacttaagaatctcaaccaaattgcaaacattttgaatccagtttctagatccataata 28146256  T
Q  101 tggtgtgaatggaaaaagccggaaattggatggacaaaactaaataccgacggttctgtaaataaagaaacagctggttttggtggtctgcttcgtgatt 200  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28146257 tggtgtgaatggaaaaagccggaaatcggatggacaaaactaaataccgacggttctgtaaataaagaaacagctggttttggtggtctgcttcgtgatt 28146356  T
Q  201 atcggggtgaaccaatttgcgcatttgtctcgaaagctcctcaaggagacactttcttggtggaactttgggctatatggagaggccttgttctctcttt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28146357 atcggggtgaaccaatttgcgcatttgtctcgaaagctcctcaaggagatactttcttggtggaactttgggctatatggagaggccttgttctctcttt 28146456  T
Q  301 aggtcttggcataaaatcaatatgggtagagtcagactccatgagtgttgttaagtcaatcaataaaatgcaacaatgtccaaaagctgaaacctgcgtg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  28146457 aggtcttggcataaaatcaatatgggtagagtcagactccatgagtgttgttaagacaatcaataaaatgcaacaatgtccaaaagctgaaacctgcgtg 28146556  T
Q  401 nnnnnnntttggaaactcttgagtaagtttgacgagtctcggatttctcactcatggcgcgaaactaatagagcggcagatcatcttgcaaagatggctg 500  Q
           |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  28146557 aaaaaaatttggaaactcttgagtaagtttgacgagtctcggatttctcactcgtggcgcgaaactaatagagcggcagatcaccttgcaaagatggctg 28146656  T
Q  501 tttgtggaaatgatgtggttttgtggccttctgatttttcacatagcctttgcaatatcattcaagatgatgccagaggaacaaaatatcttagacggtg 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28146657 tttgtggaaatgatgtggttttgtggccttctgatttttcacatagcctctgcaatatcattcaagatgatgccagaggaacaaaatatcttagacggtg 28146756  T
Q  601 agtttgcagttaccatctgaatggagttggtggagaagattc 642  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  28146757 agtttgcagttaccatctgaatggagttggtggagaagattc 28146798  T

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